Gene and translation initiation site prediction in metagenomic sequences

Doug Hyatt; Philip F. LoCascio; Loren J. Hauser; Edward C. Uberbacher

doi:10.1093/bioinformatics/bts429

Gene and translation initiation site prediction in metagenomic sequences

Bioinformatics ◽

10.1093/bioinformatics/bts429 ◽

2012 ◽

Vol 28 (17) ◽

pp. 2223-2230 ◽

Cited By ~ 256

Author(s):

Doug Hyatt ◽

Philip F. LoCascio ◽

Loren J. Hauser ◽

Edward C. Uberbacher

Keyword(s):

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Site Prediction ◽

Translation Initiation Site Prediction

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Interpretable convolutional neural networks for effective translation initiation site prediction

2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2017.8217833 ◽

2017 ◽

Cited By ~ 1

Author(s):

Jasper Zuallaert ◽

Mijung Kim ◽

Yvan Saeys ◽

Wesley De Neve

Keyword(s):

Neural Networks ◽

Convolutional Neural Networks ◽

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Site Prediction ◽

Translation Initiation Site Prediction ◽

Effective Translation

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DeepTIS: improved translation initiation site prediction in genomic sequence via a two-stage deep learning model

Digital Signal Processing ◽

10.1016/j.dsp.2021.103202 ◽

2021 ◽

pp. 103202

Author(s):

Chao Wei ◽

Junying Zhang ◽

Yuan Xiguo

Keyword(s):

Deep Learning ◽

Translation Initiation ◽

Genomic Sequence ◽

Learning Model ◽

Initiation Site ◽

Translation Initiation Site ◽

Two Stage ◽

Site Prediction ◽

Translation Initiation Site Prediction ◽

Deep Learning Model

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Extraction of Conservative Rules for Translation Initiation Site Prediction using Formal Concept Analysis

Proceedings of the 19th International Conference on Enterprise Information Systems ◽

10.5220/0006326202650271 ◽

2017 ◽

Author(s):

Leandro M. Ferreira ◽

Cristiano L. N. Pinto ◽

Sérgio M. Dias ◽

Cristiane N. Nobre ◽

Luis E. Zárate

Keyword(s):

Translation Initiation ◽

Formal Concept Analysis ◽

Concept Analysis ◽

Initiation Site ◽

Translation Initiation Site ◽

Formal Concept ◽

Site Prediction ◽

Translation Initiation Site Prediction

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The TF-IDF and Neural Networks Approach for Translation Initiation Site Prediction

2009 2nd IEEE International Conference on Computer Science and Information Technology ◽

10.1109/iccsit.2009.5234582 ◽

2009 ◽

Author(s):

Tarintorn Kongmanee ◽

Sirirut Vanichayobon ◽

Wiphada Wettayaprasit

Keyword(s):

Neural Networks ◽

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Site Prediction ◽

Translation Initiation Site Prediction

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Global sequence features based translation initiation site prediction in human genomic sequences

Heliyon ◽

10.1016/j.heliyon.2020.e04825 ◽

2020 ◽

Vol 6 (9) ◽

pp. e04825

Author(s):

Neelam Goel ◽

Shailendra Singh ◽

Trilok Chand Aseri

Keyword(s):

Translation Initiation ◽

Initiation Site ◽

Genomic Sequences ◽

Translation Initiation Site ◽

Site Prediction ◽

Sequence Features ◽

Human Genomic ◽

Translation Initiation Site Prediction

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TISRover: ConvNets learn biologically relevant features for effective translation initiation site prediction

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2018.094781 ◽

2018 ◽

Vol 20 (3) ◽

pp. 267 ◽

Cited By ~ 2

Author(s):

Jasper Zuallaert ◽

Mijung Kim ◽

Arne Soete ◽

Yvan Saeys ◽

Wesley De Neve

Keyword(s):

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Biologically Relevant ◽

Site Prediction ◽

Translation Initiation Site Prediction ◽

Effective Translation

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Multi-agent System for Translation Initiation Site Prediction

2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007) ◽

10.1109/bibm.2007.20 ◽

2007 ◽

Cited By ~ 3

Author(s):

Jia Zeng ◽

Reda Alhajj

Keyword(s):

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Multi Agent System ◽

Agent System ◽

Site Prediction ◽

Multi Agent ◽

Translation Initiation Site Prediction

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TISRover: ConvNets learn biologically relevant features for effective translation initiation site prediction

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2018.10016079 ◽

2018 ◽

Vol 20 (3) ◽

pp. 267

Author(s):

Wesley De Neve ◽

Arne Soete ◽

Yvan Saeys ◽

Jasper Zuallaert ◽

Mijung Kim

Keyword(s):

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Biologically Relevant ◽

Site Prediction ◽

Translation Initiation Site Prediction ◽

Effective Translation

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MetWAMer: eukaryotic translation initiation site prediction

BMC Bioinformatics ◽

10.1186/1471-2105-9-381 ◽

2008 ◽

Vol 9 (1) ◽

Cited By ~ 8

Author(s):

Michael E Sparks ◽

Volker Brendel

Keyword(s):

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Eukaryotic Translation ◽

Site Prediction ◽

Eukaryotic Translation Initiation ◽

Translation Initiation Site Prediction

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MANTIS: A Data Mining Methodology for Effective Translation Initiation Site Prediction

2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society ◽

10.1109/iembs.2007.4353806 ◽

2007 ◽

Cited By ~ 6

Author(s):

George Tzanis ◽

Christos Berberidis ◽

Ioannis Vlahavas

Keyword(s):

Data Mining ◽

Translation Initiation ◽

Initiation Site ◽

Translation Initiation Site ◽

Site Prediction ◽

Translation Initiation Site Prediction ◽

Effective Translation

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