scholarly journals The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain

2017 ◽  
pp. gkw1356 ◽  
Author(s):  
Brendan J. Hilbert ◽  
Janelle A. Hayes ◽  
Nicholas P. Stone ◽  
Rui-Gang Xu ◽  
Brian A. Kelch
2016 ◽  
Author(s):  
Brendan J. Hilbert ◽  
Janelle A. Hayes ◽  
Nicholas P. Stone ◽  
Rui-Gang Xu ◽  
Brian A. Kelch

AbstractMany viruses use a powerful terminase motor to pump their genome inside an empty procapsid shell during virus maturation. The large terminase (TerL) protein contains both enzymatic activities necessary for packaging in such viruses: the ATPase that powers DNA translocation and an endonuclease that cleaves the concatemeric genome both at initiation and completion of genome packaging. However, how TerL binds DNA during translocation and cleavage is still mysterious. Here we investigate DNA binding and cleavage using TerL from the thermophilic phage P74-26. We report the structure of the P74-26 TerL nuclease domain, which allows us to model DNA binding in the nuclease active site. We screened a large panel of TerL variants for defects in binding and DNA cleavage, revealing that the ATPase domain is the primary site for DNA binding, and is required for nucleolysis. The nuclease domain is dispensable for DNA binding but residues lining the active site guide DNA for cleavage. Kinetic analysis of nucleolysis suggests flexible tethering of the nuclease domains during DNA cleavage. We propose that interactions with the procapsid shell during DNA translocation conformationally restrict the nuclease domain, inhibiting cleavage; TerL release from the procapsid upon completion of packaging unlocks the nuclease domains to cleave DNA.


2019 ◽  
Author(s):  
Janelle A. Hayes ◽  
Brendan J. Hilbert ◽  
Christl Gaubitz ◽  
Nicholas P. Stone ◽  
Brian A. Kelch

SUMMARYTailed bacteriophage use a DNA packaging motor to encapsulate their genome during viral particle assembly. The small terminase (TerS) component acts as a molecular matchmaker by recognizing the viral genome as well as the main motor component, the large terminase (TerL). How TerS binds DNA and the TerL protein remains unclear. Here, we identify the TerS protein of the thermophilic bacteriophage P74-26. TerSP76-26 oligomerizes into a nonamer that binds DNA, stimulates TerL ATPase activity, and inhibits TerL nuclease activity. Our cryo-EM structure shows that TerSP76-26 forms a ring with a wide central pore and radially arrayed helix-turn-helix (HTH) domains. These HTH domains, which are thought to bind DNA by wrapping the helix around the ring, are rigidly held in an orientation distinct from that seen in other TerS proteins. This rigid arrangement of the putative DNA binding domain imposes strong constraints on how TerSP76-26 can bind DNA. Finally, the TerSP76-26 structure lacks the conserved C-terminal β-barrel domain used by other TerS proteins for binding TerL, suggesting that a well-ordered C-terminal β-barrel domain is not necessary for TerS to carry out its function as a matchmaker.


2007 ◽  
Vol 36 (3) ◽  
pp. 839-848 ◽  
Author(s):  
Aya Kitamura ◽  
Paul J. Jardine ◽  
Dwight L. Anderson ◽  
Shelley Grimes ◽  
Hiroshi Matsuo

2018 ◽  
Vol 114 (3) ◽  
pp. 92a
Author(s):  
Juan P. Castillo ◽  
Alexander Tong ◽  
Sara Tafoya ◽  
Paul Jardine ◽  
Carlos Bustamante

2016 ◽  
Vol 110 (3) ◽  
pp. 46a ◽  
Author(s):  
Li Dai ◽  
Digvijay Singh ◽  
Reza Vafabakhsh ◽  
Marthandan Mahalingam ◽  
Vishal Kottadiel ◽  
...  

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