scholarly journals Pattern formation from spatially heterogeneous reaction–diffusion systems

Author(s):  
Robert A. Van Gorder

First proposed by Turing in 1952, the eponymous Turing instability and Turing pattern remain key tools for the modern study of diffusion-driven pattern formation. In spatially homogeneous Turing systems, one or a few linear Turing modes dominate, resulting in organized patterns (peaks in one dimension; spots, stripes, labyrinths in two dimensions) which repeats in space. For a variety of reasons, there has been increasing interest in understanding irregular patterns, with spatial heterogeneity in the underlying reaction–diffusion system identified as one route to obtaining irregular patterns. We study pattern formation from reaction–diffusion systems which involve spatial heterogeneity, by way of both analytical and numerical techniques. We first extend the classical Turing instability analysis to track the evolution of linear Turing modes and the nascent pattern, resulting in a more general instability criterion which can be applied to spatially heterogeneous systems. We also calculate nonlinear mode coefficients, employing these to understand how each spatial mode influences the long-time evolution of a pattern. Unlike for the standard spatially homogeneous Turing systems, spatially heterogeneous systems may involve many Turing modes of different wavelengths interacting simultaneously, with resulting patterns exhibiting a high degree of variation over space. We provide a number of examples of spatial heterogeneity in reaction–diffusion systems, both mathematical (space-varying diffusion parameters and reaction kinetics, mixed boundary conditions, space-varying base states) and physical (curved anisotropic domains, apical growth of space domains, chemicalsimmersed within a flow or a thermal gradient), providing a qualitative understanding of how spatial heterogeneity can be used to modify classical Turing patterns. This article is part of the theme issue ‘Recent progress and open frontiers in Turing’s theory of morphogenesis’.

Author(s):  
Robert A. Van Gorder

The Turing instability is one of the most commonly studied mechanisms leading to pattern formation in reaction–diffusion systems, yet there are still many open questions on the applicability of the Turing mechanism. Although experiments on pattern formation using chemical systems have shown that temperature differences play a role in pattern formation, there is far less theoretical work concerning the interplay between temperature and spatial instabilities. We consider a thermodynamically extended reaction–diffusion system, consisting of a pair of reaction–diffusion equations coupled to an energy equation for temperature, and use this to obtain a natural extension of the Turing instability accounting for temperature. We show that thermal contributions can restrict or enlarge the set of unstable modes possible under the instability, and in some cases may be used to completely shift the set of unstable modes, strongly modifying emergent Turing patterns. Spatial heterogeneity plays a role under several experimentally feasible configurations, and we give particular consideration to scenarios involving thermal gradients, thermodynamics of chemicals transported within a flow, and thermodiffusion. Control of Turing patterns is also an area of active interest, and we also demonstrate how patterns can be modified using time-dependent control of the boundary temperature.


2021 ◽  
Vol 83 (5) ◽  
Author(s):  
Thomas E. Woolley ◽  
Andrew L. Krause ◽  
Eamonn A. Gaffney

AbstractReaction–diffusion systems are an intensively studied form of partial differential equation, frequently used to produce spatially heterogeneous patterned states from homogeneous symmetry breaking via the Turing instability. Although there are many prototypical “Turing systems” available, determining their parameters, functional forms, and general appropriateness for a given application is often difficult. Here, we consider the reverse problem. Namely, suppose we know the parameter region associated with the reaction kinetics in which patterning is required—we present a constructive framework for identifying systems that will exhibit the Turing instability within this region, whilst in addition often allowing selection of desired patterning features, such as spots, or stripes. In particular, we show how to build a system of two populations governed by polynomial morphogen kinetics such that the: patterning parameter domain (in any spatial dimension), morphogen phases (in any spatial dimension), and even type of resulting pattern (in up to two spatial dimensions) can all be determined. Finally, by employing spatial and temporal heterogeneity, we demonstrate that mixed mode patterns (spots, stripes, and complex prepatterns) are also possible, allowing one to build arbitrarily complicated patterning landscapes. Such a framework can be employed pedagogically, or in a variety of contemporary applications in designing synthetic chemical and biological patterning systems. We also discuss the implications that this freedom of design has on using reaction–diffusion systems in biological modelling and suggest that stronger constraints are needed when linking theory and experiment, as many simple patterns can be easily generated given freedom to choose reaction kinetics.


Author(s):  
Houye Liu ◽  
Weiming Wang

Amplitude equation may be used to study pattern formatio. In this chapter, we establish a new mechanical algorithm AE_Hopf for calculating the amplitude equation near Hopf bifurcation based on the method of normal form approach in Maple. The normal form approach needs a large number of variables and intricate calculations. As a result, deriving the amplitude equation from diffusion-reaction is a difficult task. Making use of our mechanical algorithm, we derived the amplitude equations from several biology and physics models. The results indicate that the algorithm is easy to apply and effective. This algorithm may be useful for learning the dynamics of pattern formation of reaction-diffusion systems in future studies.


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