Biological small-angle neutron scattering: recent results and development

2018 ◽  
Vol 74 (8) ◽  
pp. 715-726 ◽  
Author(s):  
Emilie Mahieu ◽  
Frank Gabel

Small-angle neutron scattering (SANS) has increasingly been used by the structural biology community in recent years to obtain low-resolution information on solubilized biomacromolecular complexes in solution. In combination with deuterium labelling and solvent-contrast variation (H2O/D2O exchange), SANS provides unique information on individual components in large heterogeneous complexes that is perfectly complementary to the structural restraints provided by crystallography, nuclear magnetic resonance and electron microscopy. Typical systems studied include multi-protein or protein–DNA/RNA complexes and solubilized membrane proteins. The internal features of these systems are less accessible to the more broadly used small-angle X-ray scattering (SAXS) technique owing to a limited range of intra-complex and solvent electron-density variation. Here, the progress and developments of biological applications of SANS in the past decade are reviewed. The review covers scientific results from selected biological systems, including protein–protein complexes, protein–RNA/DNA complexes and membrane proteins. Moreover, an overview of recent developments in instruments, sample environment, deuterium labelling and software is presented. Finally, the perspectives for biological SANS in the context of integrated structural biology approaches are discussed.

2013 ◽  
Vol 36 (7) ◽  
Author(s):  
Cécile Breyton ◽  
Frank Gabel ◽  
Mathilde Lethier ◽  
Ali Flayhan ◽  
Grégory Durand ◽  
...  

Neutron News ◽  
1998 ◽  
Vol 9 (2) ◽  
pp. 24-28 ◽  
Author(s):  
M. Agamalian ◽  
G. D. Wignall ◽  
R. Triolo

2020 ◽  
Vol 236 ◽  
pp. 03001
Author(s):  
Cy M. Jeffries ◽  
Zuzanna Pietras ◽  
Dmitri I. Svergun

Small-angle neutron scattering (SANS) provides a means to probe the time-preserved structural state(s) of bio-macromolecules in solution. As such, SANS affords the opportunity to assess the redistribution of mass, i.e., changes in conformation, which occur when macromolecules interact to form higher-order assemblies and to evaluate the structure and disposition of components within such systems. As a technique, SANS offers scope for ‘out of the box thinking’, from simply investigating the structures of macromolecules and their complexes through to where structural biology interfaces with soft-matter and nanotechnology. All of this simply rests on the way neutrons interact and scatter from atoms (largely hydrogens) and how this interaction differs from the scattering of neutrons from the nuclei of other ‘biological isotopes’. The following chapter describes the basics of neutron scattering for new users of structural biology in context of the neutron/hydrogen interaction and how this can be exploited to interrogate the structures of macromolecules, their complexes and nano-conjugates in solution.


2009 ◽  
Vol 10 (6) ◽  
pp. 1346-1357 ◽  
Author(s):  
I. Schmidt ◽  
F. Cousin ◽  
C. Huchon ◽  
F. Boué ◽  
M. A.V. Axelos

2019 ◽  
Vol 52 (6) ◽  
pp. 1427-1436
Author(s):  
Martin Cramer Pedersen ◽  
Yong Wang ◽  
Frederik Grønbæk Tidemand ◽  
Anne Martel ◽  
Kresten Lindorff-Larsen ◽  
...  

Recent developments in neutron scattering instrumentation and sample handling have enabled studies of more complex biological samples and measurements at shorter exposure times. The experiments are typically conducted in D2O-based buffers to emphasize or diminish scattering from a particular component or to minimize background noise in the experiment. To extract most information from such experiments it is thus desirable to determine accurate estimates of how and when closely bound hydrogen atoms from the biomolecule exchange with the deuterium in the solvent. This article introduces and documents software, PSX, for exploring the effect of hydrogen–deuterium exchange for proteins solubilized in D2O as well as the underlying bioinformatical models. The software aims to be generally applicable for any atomistic structure of a protein and its surrounding environment, and thus captures effects of both heterogenous exchange rates throughout the protein structure and varying the experimental conditions such as pH and temperature. The paper concludes with examples of applications and estimates of the effect in typical scenarios emerging in small-angle neutron scattering on biological macromolecules in solution. The analysis presented here suggests that the common assumption of 90% exchange is in many cases an overestimate with the rapid sample handling systems currently available, which leads to fitting and calibration issues when analysing the data. Source code for the presented software is available from an online repository in which it is published under version 3 of the GNU publishing licence.


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