Observation of a transition to a localized ultrasonic phase in soft matter

Anderson localization arises from the interference of multiple scattering paths in a disordered medium, and applies to both quantum and classical waves. Soft matter provides a unique potential platform to observe localization of non-interacting classical waves because of the order of magnitude difference in speed between fast and slow waves in conjunction with the possibility to achieve strong scattering over broad frequency bands while minimizing dissipation. Here, we provide long sought evidence of a localized phase spanning up to 246 kHz for fast (sound) waves in a soft elastic medium doped with resonant encapsulated microbubbles. We find the transition into the localized phase is accompanied by an anomalous decrease of the mean free path, which provides an experimental signature of the phase transition. At the transition, the decrease in the mean free path with changing frequency (i.e., disorder strength) follows a power law with a critical exponent near unity. Within the localized phase the mean free path is in the range 0.4–1.0 times the wavelength, the transmitted intensity at late times is well-described by the self-consistent localization theory, and the localization length decreases with increasing microbubble volume fraction. Our work sets the foundation for broadband control of localization and the associated phase transition in soft matter, and affords a comparison of theory to experiment.

A Liquid State Perspective on Dynamics of Chromatin Compartments

The interior of the eukaryotic cell nucleus has a crowded and heterogeneous environment packed with chromatin polymers, regulatory proteins, and RNA molecules. Chromatin polymer, assisted by epigenetic modifications, protein and RNA binders, forms multi-scale compartments which help regulate genes in response to cellular signals. Furthermore, chromatin compartments are dynamic and tend to evolve in size and composition in ways that are not fully understood. The latest super-resolution imaging experiments have revealed a much more dynamic and stochastic nature of chromatin compartments than was appreciated before. An emerging mechanism explaining chromatin compartmentalization dynamics is the phase separation of protein and nucleic acids into membraneless liquid condensates. Consequently, concepts and ideas from soft matter and polymer systems have been rapidly entering the lexicon of cell biology. In this respect, the role of computational models is crucial for establishing a rigorous and quantitative foundation for the new concepts and disentangling the complex interplay of forces that contribute to the emergent patterns of chromatin dynamics and organization. Several multi-scale models have emerged to address various aspects of chromatin dynamics, ranging from equilibrium polymer simulations, hybrid non-equilibrium simulations coupling protein binding and chromatin folding, and mesoscopic field-theoretic models. Here, we review these emerging theoretical paradigms and computational models with a particular focus on chromatin’s phase separation and liquid-like properties as a basis for nuclear organization and dynamics.

Expanding quasiperiodicity in soft matter: Supramolecular decagonal quasicrystals by binary giant molecule blends

The quasiperiodic structures in metal alloys have been known to depend on the existence of icosahedral order in the melt. Among different phases observed in intermetallics, decagonal quasicrystal (DQC) structures have been identified in many glass-forming alloys yet remain inaccessible in bulk-state condensed soft matters. Via annealing the mixture of two giant molecules, the binary system assemblies into an axial DQC superlattice, which is identified comprehensively with meso-atomic accuracy. Analysis indicates that the DQC superlattice is composed of mesoatoms with an unusually broad volume distribution. The interplays of submesoatomic (molecular) and mesoatomic (supramolecular) local packings are found to play a crucial role in not only the formation of the metastable DQC superlattice but also its transition to dodecagonal quasicrystal and Frank–Kasper σ superlattices.

Tracking the time evolution of soft matter systems via topological structural heterogeneity

Persistent homology is an effective topological data analysis tool to quantify the structural and morphological features of soft materials, but so far it has not been used to characterise the dynamical behaviour of complex soft matter systems. Here, we introduce structural heterogeneity, a topological characteristic for semi-ordered materials that captures their degree of organisation at a mesoscopic level and tracks their time-evolution, ultimately detecting the order-disorder transition at the microscopic scale. We show that structural heterogeneity tracks structural changes in a liquid crystal nanocomposite, reveals the effect of confined geometry on the nematic-isotropic and isotropic-nematic phase transitions, and uncovers physical differences between these two processes. The system used in this work is representative of a class of composite nanomaterials, partially ordered and with complex structural and physical behaviour, where their precise characterisation poses significant challenges. Our developed analytic framework can provide both a qualitative and quantitative characterisation of the dynamical behaviour of a wide range of semi-ordered soft matter systems.

Correction: Guided run-and-tumble active particles: wall accumulation and preferential deposition

Correction for ‘Guided run-and-tumble active particles: wall accumulation and preferential deposition’ by Chamkor Singh, Soft Matter, 2021, 17, 8858–8866, DOI: 10.1039/D1SM00775K.

Correction: Simulation of dense non-Brownian suspensions with the lattice Boltzmann method: shear jammed and fragile states

Correction for ‘Simulation of dense non-Brownian suspensions with the lattice Boltzmann method: shear jammed and fragile states’ by Pradipto et al., Soft Matter, 2020, 16, 945–959, DOI: 10.1039/C9SM00850K.

Reply to the ‘Comment on “Tensional homeostasis at different length scales” by J. Humphrey and C. Cyron, Soft Matter, 2022, 18, DOI: 10.1039/D1SM01151K’

In this Reply to the Comment, we discuss data from the literature which show that the idea that tensional homeostasis in focal adhesions (FAs) of living cells exists over “a central range of FAs”, which is promulgated in the Comment, is not tenable.