Parallel numerical solution to large-scale eigenvalue problem in master equation of protein folding kinetics

20th International Conference on Advanced Information Networking and Applications - Volume 1 (AINA'06) ◽

10.1109/aina.2006.257 ◽

2006 ◽

Author(s):

Yiming Li ◽

Shao-Ming Yu

Keyword(s):

Protein Folding ◽

Eigenvalue Problem ◽

Numerical Solution ◽

Master Equation ◽

Large Scale ◽

Folding Kinetics

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Parallel solution of large-scale eigenvalue problem for master equation in protein folding dynamics

Journal of Parallel and Distributed Computing ◽

10.1016/j.jpdc.2007.09.002 ◽

2008 ◽

Vol 68 (5) ◽

pp. 678-685 ◽

Author(s):

Yiming Li ◽

Shao-Ming Yu ◽

Yih-Lang Li

Keyword(s):

Protein Folding ◽

Eigenvalue Problem ◽

Master Equation ◽

Large Scale ◽

Parallel Solution ◽

Folding Dynamics

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Numerical solutions of a master equation for protein folding kinetics

International Journal of Bioinformatics Research and Applications ◽

10.1504/ijbra.2006.011040 ◽

2006 ◽

Vol 2 (4) ◽

pp. 420 ◽

Author(s):

Yiming Li

Keyword(s):

Protein Folding ◽

Master Equation ◽

Numerical Solutions ◽

Folding Kinetics

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Numerical Solutions of Master Equation for Protein Folding Kinetics

11th International Conference on Parallel and Distributed Systems (ICPADS'05) ◽

10.1109/icpads.2005.205 ◽

2006 ◽

Author(s):

Yiming Li

Keyword(s):

Protein Folding ◽

Master Equation ◽

Numerical Solutions ◽

Folding Kinetics

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A comparative study of numerical algorithms in calculating eigenpairs of the master equation for protein folding kinetics

Electrical Performance of Electronic Packaging IWCE-04 ◽

10.1109/iwce.2004.1407397 ◽

2004 ◽

Author(s):

Yiming Li

Keyword(s):

Protein Folding ◽

Comparative Study ◽

Master Equation ◽

Numerical Algorithms ◽

Folding Kinetics

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Faculty Opinions recommendation of Transition states and the meaning of Phi-values in protein folding kinetics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1001808.11568 ◽

2001 ◽

Author(s):

Lila Gierasch

Keyword(s):

Protein Folding ◽

Transition States ◽

Folding Kinetics

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Faculty Opinions recommendation of Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1031338.363675 ◽

2006 ◽

Author(s):

Valerie Daggett

Keyword(s):

Protein Folding ◽

Folding Kinetics ◽

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Cooperativity in protein-folding kinetics.

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.90.5.1942 ◽

1993 ◽

Vol 90 (5) ◽

pp. 1942-1946 ◽

Author(s):

K. A. Dill ◽

K. M. Fiebig ◽

H. S. Chan

Keyword(s):

Protein Folding ◽

Folding Kinetics

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Eigenvalue problem of a large scale indefinite gyroscopic dynamic system

Applied Mathematics and Mechanics ◽

10.1007/s10483-006-0103-z ◽

2006 ◽

Vol 27 (1) ◽

pp. 15-22 ◽

Author(s):

Yong-feng Sui ◽

Wan-xie Zhong

Keyword(s):

Eigenvalue Problem ◽

Dynamic System ◽

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Prediction of protein folding using the shift-learning method with a large scale neural network

[Proceedings] 1991 IEEE International Joint Conference on Neural Networks ◽

10.1109/ijcnn.1991.170580 ◽

1991 ◽

Author(s):

M.O. Poliac ◽

G.L. Wilcox ◽

Y. Xin ◽

T. Carmeli ◽

M. Liebman

Keyword(s):

Neural Network ◽

Protein Folding ◽

Large Scale ◽

Learning Method

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Numerical Solution of the Inverse Eigenvalue Problem for Real Symmetric Toeplitz Matrices

SIAM Journal on Scientific Computing ◽

10.1137/s1064827595280673 ◽

1997 ◽

Vol 18 (6) ◽

pp. 1722-1736 ◽

Author(s):

William F. Trench

Keyword(s):

Eigenvalue Problem ◽

Numerical Solution ◽

Toeplitz Matrices ◽

Inverse Eigenvalue Problem ◽

Inverse Eigenvalue

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