Parallel solution of large-scale eigenvalue problem for master equation in protein folding dynamics

Journal of Parallel and Distributed Computing ◽

10.1016/j.jpdc.2007.09.002 ◽

2008 ◽

Vol 68 (5) ◽

pp. 678-685 ◽

Author(s):

Yiming Li ◽

Shao-Ming Yu ◽

Yih-Lang Li

Keyword(s):

Protein Folding ◽

Eigenvalue Problem ◽

Master Equation ◽

Large Scale ◽

Parallel Solution ◽

Folding Dynamics

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Parallel numerical solution to large-scale eigenvalue problem in master equation of protein folding kinetics

20th International Conference on Advanced Information Networking and Applications - Volume 1 (AINA'06) ◽

10.1109/aina.2006.257 ◽

2006 ◽

Author(s):

Yiming Li ◽

Shao-Ming Yu

Keyword(s):

Protein Folding ◽

Eigenvalue Problem ◽

Numerical Solution ◽

Master Equation ◽

Large Scale ◽

Folding Kinetics

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Faculty Opinions recommendation of Time-resolved small-angle X-ray scattering investigation of the folding dynamics of heme oxygenase: implication of the scaling relationship for the submillisecond intermediates of protein folding.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1007608.373952 ◽

2006 ◽

Author(s):

Kunihiro Kuwajima

Keyword(s):

Protein Folding ◽

Heme Oxygenase ◽

Small Angle ◽

Time Resolved ◽

X Ray ◽

X Ray Scattering ◽

Scaling Relationship ◽

Folding Dynamics ◽

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Editorial [Hot Topic: Protein Folding Dynamics (Guest Editor: Dr. Ruhong Zhou)]

Current Physical Chemistrye ◽

10.2174/1877947611202010002 ◽

2012 ◽

Vol 2 (1) ◽

pp. 2-3

Author(s):

Ruhong Zhou

Keyword(s):

Protein Folding ◽

Guest Editor ◽

Folding Dynamics

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Effects of Energetic Heterogeneity on Protein Folding Dynamics Across Many Non-Homologous Proteins

Biophysical Journal ◽

10.1016/j.bpj.2013.11.3727 ◽

2014 ◽

Vol 106 (2) ◽

pp. 673a

Author(s):

Claude Sinner ◽

Benjamin Lutz ◽

Abhinav Verma ◽

Alexander Schug

Keyword(s):

Protein Folding ◽

Homologous Proteins ◽

Energetic Heterogeneity ◽

Folding Dynamics

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Flexibility damps macromolecular crowding effects on protein folding dynamics: Application to the murine prion protein (121–231)

Chemical Physics Letters ◽

10.1016/j.cplett.2013.11.035 ◽

2014 ◽

Vol 591 ◽

pp. 207-211 ◽

Author(s):

Fernando Bergasa-Caceres ◽

Herschel A. Rabitz

Keyword(s):

Protein Folding ◽

Prion Protein ◽

Macromolecular Crowding ◽

Crowding Effects ◽

Folding Dynamics

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Eigenvalue problem of a large scale indefinite gyroscopic dynamic system

Applied Mathematics and Mechanics ◽

10.1007/s10483-006-0103-z ◽

2006 ◽

Vol 27 (1) ◽

pp. 15-22 ◽

Author(s):

Yong-feng Sui ◽

Wan-xie Zhong

Keyword(s):

Eigenvalue Problem ◽

Dynamic System ◽

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Prediction of protein folding using the shift-learning method with a large scale neural network

[Proceedings] 1991 IEEE International Joint Conference on Neural Networks ◽

10.1109/ijcnn.1991.170580 ◽

1991 ◽

Author(s):

M.O. Poliac ◽

G.L. Wilcox ◽

Y. Xin ◽

T. Carmeli ◽

M. Liebman

Keyword(s):

Neural Network ◽

Protein Folding ◽

Large Scale ◽

Learning Method

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Parallel Solution of Large Scale Quadratic Programs

Applied Optimization - High Performance Algorithms and Software in Nonlinear Optimization ◽

10.1007/978-1-4613-3279-4_13 ◽

1998 ◽

pp. 189-205 ◽

Author(s):

Emanuele Galligani ◽

Valeria Ruggiero ◽

Luca Zanni

Keyword(s):

Large Scale ◽

Quadratic Programs ◽

Parallel Solution

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Parallel solution of some large-scale eigenvalue problems arising in chemistry and physics

Lecture Notes in Computer Science - Applied Parallel Computing Large Scale Scientific and Industrial Problems ◽

10.1007/bfb0095339 ◽

1998 ◽

pp. 216-223

Author(s):

David L. Harrar ◽

Michael R. Osborne

Keyword(s):

Large Scale ◽

Eigenvalue Problems ◽

Parallel Solution

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Staring at a Protein: Ensemble and Single-Molecule Investigations on Protein-Folding Dynamics

Single-Molecule Biophysics - Advances in Chemical Physics ◽

10.1002/9781118131374.ch1 ◽

2011 ◽

pp. 1-22

Author(s):

Satoshi Takahashi ◽

Kiyoto Kamagata

Keyword(s):

Protein Folding ◽

Single Molecule ◽

Folding Dynamics

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