Ant Colony Optimisation with Breslauer Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing

2014 8th Asia Modelling Symposium ◽

10.1109/ams.2014.13 ◽

2014 ◽

Author(s):

Zuwairie Ibrahim ◽

Mohd Falfazli Mat Jusof ◽

Mohd Zaidi Mohd Tumari

Keyword(s):

Thermodynamic Parameter ◽

Dna Sequence ◽

Dna Computing ◽

Nearest Neighbour ◽

Ant Colony Optimisation ◽

Sequence Design ◽

Dna Sequence Design

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Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing

2014 International Conference on Soft Computing and Machine Intelligence ◽

10.1109/iscmi.2014.40 ◽

2014 ◽

Author(s):

Zuwairie Ibrahim ◽

Mohd Falfazli Mat Jusof ◽

Mohd Zaidi Mohd Tumari

Keyword(s):

Thermodynamic Parameter ◽

Dna Sequence ◽

Dna Computing ◽

Nearest Neighbour ◽

Ant Colony Optimisation ◽

Sequence Design ◽

Dna Sequence Design

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DNA Sequence Design for Direct-Proportional Length-Based DNA Computing: Particle Swarm Optimization vs Population Based Ant Colony Optimization

2012 Fourth International Conference on Computational Intelligence, Modelling and Simulation ◽

10.1109/cimsim.2012.27 ◽

2012 ◽

Author(s):

Zulkifli Md. Yusof ◽

Muhammad Arif Abdul Rahim ◽

Sophan Wahyudi Nawawi ◽

Kamal Khalil ◽

Zuwairie Ibrahim ◽

...

Keyword(s):

Particle Swarm Optimization ◽

Ant Colony Optimization ◽

Dna Sequence ◽

Dna Computing ◽

Particle Swarm ◽

Population Based ◽

Swarm Optimization ◽

Sequence Design ◽

Dna Sequence Design

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Evaluation of Ordering Methods for DNA Sequence Design Based on Ant Colony System

2008 Second Asia International Conference on Modelling & Simulation (AMS) ◽

10.1109/ams.2008.37 ◽

2008 ◽

Author(s):

Tri Basuki Kurniawan ◽

Noor Khafifah Khalid ◽

Zuwairie Ibrahim ◽

Marzuki Khalid ◽

Martin Middendorf

Keyword(s):

Dna Sequence ◽

Ant Colony System ◽

Sequence Design ◽

Dna Sequence Design

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Performance Evaluation and Benchmarking of an Extended Computational Model of Ant Colony System for DNA Sequence Design

International Journal of Simulation Systems Science & Technology ◽

10.5013/ijssst.a.15.06.06 ◽

2020 ◽

Author(s):

Zuwairie Ibrahim ◽

Mohd Falfazli Mat Jusof ◽

Mohd Zaidi Mohd Tumari

Keyword(s):

Performance Evaluation ◽

Computational Model ◽

Dna Sequence ◽

Ant Colony System ◽

Sequence Design ◽

Dna Sequence Design

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A membrane evolutionary algorithm for DNA sequence design in DNA computing

Chinese Science Bulletin ◽

10.1007/s11434-011-4928-7 ◽

2012 ◽

Vol 57 (6) ◽

pp. 698-706 ◽

Author(s):

JianHua Xiao ◽

XingYi Zhang ◽

Jin Xu

Keyword(s):

Evolutionary Algorithm ◽

Dna Sequence ◽

Dna Computing ◽

Sequence Design ◽

Dna Sequence Design

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DNA sequence design for reliable DNA computing by using a multiobjective approach

2012 IEEE 13th International Symposium on Computational Intelligence and Informatics (CINTI) ◽

10.1109/cinti.2012.6496736 ◽

2012 ◽

Author(s):

J.M. Chaves-Gonzalez ◽

M.A. Vega-Rodriguez

Keyword(s):

Dna Sequence ◽

Dna Computing ◽

Sequence Design ◽

Dna Sequence Design ◽

Multiobjective Approach

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Population-Based Ant Colony Optimization with New Hierarchical Pheromone Updating Mechanism for DNA Sequence Design Problem

Proceedings of the Sriwijaya International Conference on Information Technology and Its Applications (SICONIAN 2019) ◽

10.2991/aisr.k.200424.068 ◽

2020 ◽

Author(s):

MISINEM ◽

ERMATITA ◽

Dian Palupi RINI ◽

Reza Firsandaya MALIK ◽

Tri Basuki KURNIAWAN

Keyword(s):

Ant Colony Optimization ◽

Dna Sequence ◽

Design Problem ◽

Population Based ◽

Sequence Design ◽

Dna Sequence Design

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A DNA Sequence Design for Direct-Proportional Length-Based DNA Computing using DNASequenceGenerator

Second International Conference on Innovative Computing, Informatio and Control (ICICIC 2007) ◽

10.1109/icicic.2007.17 ◽

2007 ◽

Author(s):

Zuwairie Ibrahim ◽

Tri Basuki Kurniawan ◽

Marzuki Khalid ◽

Osamu Ono

Keyword(s):

Dna Sequence ◽

Dna Computing ◽

Sequence Design ◽

Dna Sequence Design

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A modified computational model of ant colony system in DNA sequence design

2011 IEEE Student Conference on Research and Development ◽

10.1109/scored.2011.6148729 ◽

2011 ◽

Author(s):

Seri Mastura Mustaza ◽

Amar Faiz Zainal Abidin ◽

Zuwairie Ibrahim ◽

Mohammad Amir Shamsudin ◽

Abdul Rashid Husain ◽

...

Keyword(s):

Computational Model ◽

Dna Sequence ◽

Ant Colony System ◽

Sequence Design ◽

Dna Sequence Design

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Hierarchy Evolutionary Searching Algorithm for DNA Encoding Sequence

Applied Mechanics and Materials ◽

10.4028/www.scientific.net/amm.20-23.94 ◽

2010 ◽

Vol 20-23 ◽

pp. 94-98

Author(s):

Lian Ye ◽

Jing Chen ◽

Yong Kang Xing

Keyword(s):

Dna Sequence ◽

Dna Sequences ◽

Dna Computing ◽

Reaction Process ◽

Dna Encoding ◽

Molecular Computation ◽

Sequence Design ◽

Dna Sequence Design ◽

Molecular Reaction

DNA sequence design is the basic and important step for DNA computing. Good codeword could avoid some error may possibly occurred in practical computing. Therefore, much work has focused on designing the DNA sequences to make the molecular computation more reliable. In this paper, a new hierarchy evolutionary searching algorithm is proposed to obtain good DNA encoding sequences, this approach is based on combinatorial constraints which affect the molecular reaction process, and can provide some reliable and effective encoding sequences for controllable DNA computing.

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