scholarly journals GPU-RMAP: Accelerating Short-Read Mapping on Graphics Processors

2010 ◽  
Author(s):  
Ashwin M. Aji ◽  
Liqing Zhang ◽  
Wu-chun Feng
Keyword(s):  
Graphics Processors ◽  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping

scholarly journals SEAL: a distributed short read mapping and duplicate removal tool

2011 ◽  
Vol 27 (15) ◽  
pp. 2159-2160 ◽  
Author(s):  
L. Pireddu ◽  
S. Leo ◽  
G. Zanetti
Keyword(s):  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping

scholarly journals Short Read Mapping: An Algorithmic Tour

2017 ◽  
Vol 105 (3) ◽  
pp. 436-458 ◽  
Author(s):  
Stefan Canzar ◽  
Steven L. Salzberg
Keyword(s):  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping

scholarly journals MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

PLoS ONE ◽  
2014 ◽  
Vol 9 (3) ◽  
pp. e90581 ◽  
Author(s):  
Wan-Ping Lee ◽  
Michael P. Stromberg ◽  
Alistair Ward ◽  
Chip Stewart ◽  
Erik P. Garrison ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Next Generation ◽  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping ◽  
Generation Sequencing

scholarly journals An Efficient GPUAccelerated Implementation of Genomic Short Read Mapping with BWAMEM

2017 ◽  
Vol 44 (4) ◽  
pp. 38-43 ◽  
Author(s):  
Ernst Joachim Houtgast ◽  
VladMihai Sima ◽  
Koen Bertels ◽  
Zaid AlArs
Keyword(s):  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping

Unified View of Backward Backtracking in Short Read Mapping

2010 ◽  
pp. 182-195 ◽  
Author(s):  
Veli Mäkinen ◽  
Niko Välimäki ◽  
Antti Laaksonen ◽  
Riku Katainen
Keyword(s):  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping ◽  
Unified View

Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths

2018 ◽  
Vol 75 ◽  
pp. 54-64 ◽  
Author(s):  
Ernst Joachim Houtgast ◽  
Vlad-Mihai Sima ◽  
Koen Bertels ◽  
Zaid Al-Ars
Keyword(s):  
Hardware Acceleration ◽  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping

scholarly journals mrsFAST: a cache-oblivious algorithm for short-read mapping

2010 ◽  
Vol 7 (8) ◽  
pp. 576-577 ◽  
Author(s):  
Faraz Hach ◽  
Fereydoun Hormozdiari ◽  
Can Alkan ◽  
Farhad Hormozdiari ◽  
Inanc Birol ◽  
...  
Keyword(s):  
Read Mapping ◽  
Short Read ◽  
Short Read Mapping ◽  
Cache Oblivious
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