Accelerating Force-directed Graph Layout with Processing-in-Memory Architecture

Author(s):  
Ruihao Li ◽  
Shuang Song ◽  
Qinzhe Wu ◽  
Lizy K. John
NeuroImage ◽  
2011 ◽  
Vol 54 (3) ◽  
pp. 2176-2184 ◽  
Author(s):  
Alessandro Crippa ◽  
Leonardo Cerliani ◽  
Luca Nanetti ◽  
Jos B.T.M. Roerdink
Keyword(s):  

2016 ◽  
Vol 13 (2) ◽  
pp. 397-408 ◽  
Author(s):  
Yuji Fujita ◽  
Yoshi Fujiwara ◽  
Wataru Souma
Keyword(s):  

2019 ◽  
Author(s):  
Robert Gove

Recent work shows that sampling algorithms can be an effective tool for graph visualization. This paper extends prior work by applying edge sampling algorithms to speed up the spring force calculation in force-directed graph layout algorithms. An experiment on 72 graphs finds that some sampling algorithms achieve comparable quality as no sampling. This result is confirmed with visualizations of the graph layout results. However, runtime improvements are small, especially for graphs with 10,000 vertices or fewer, indicating that the runtime savings might not be worth the risk to layout quality. Therefore, this paper suggests that accurate spring forces may be more important to force-directed graph layout algorithms than accurate electric forces. A copy of this paper plus the code and data to reproduce the results are available at https://osf.io/4ja29/


2021 ◽  
Author(s):  
◽  
Roman Klapaukh

<p>Force-directed graph layout is a widely used algorithm for the automatic layout of graphs. Little experimental work has been done exploring the behaviour of the algorithm under a variety of conditions. This thesis carries out three large-scale metric-based experiments. The first explores how the core algorithm behaves under changes to initial conditions. The second looks at extending the force-directed layout algorithm with additional forces to reduce overlaps. The third develops a novel symmetry metric for graphs and uses that to explore the symmetries of graphs. This thesis also carries out a user study to show that the differences reported by metrics in the graphs are reflected in a difference in user performance when using graphs for a free-form selection task.</p>


2021 ◽  
Author(s):  
◽  
Roman Klapaukh

<p>Force-directed graph layout is a widely used algorithm for the automatic layout of graphs. Little experimental work has been done exploring the behaviour of the algorithm under a variety of conditions. This thesis carries out three large-scale metric-based experiments. The first explores how the core algorithm behaves under changes to initial conditions. The second looks at extending the force-directed layout algorithm with additional forces to reduce overlaps. The third develops a novel symmetry metric for graphs and uses that to explore the symmetries of graphs. This thesis also carries out a user study to show that the differences reported by metrics in the graphs are reflected in a difference in user performance when using graphs for a free-form selection task.</p>


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