An Empirical Evaluation of Force-Directed Graph Layout

<p>Force-directed graph layout is a widely used algorithm for the automatic layout of graphs. Little experimental work has been done exploring the behaviour of the algorithm under a variety of conditions. This thesis carries out three large-scale metric-based experiments. The first explores how the core algorithm behaves under changes to initial conditions. The second looks at extending the force-directed layout algorithm with additional forces to reduce overlaps. The third develops a novel symmetry metric for graphs and uses that to explore the symmetries of graphs. This thesis also carries out a user study to show that the differences reported by metrics in the graphs are reflected in a difference in user performance when using graphs for a free-form selection task.</p>

An Empirical Evaluation of Force-Directed Graph Layout

<p>Force-directed graph layout is a widely used algorithm for the automatic layout of graphs. Little experimental work has been done exploring the behaviour of the algorithm under a variety of conditions. This thesis carries out three large-scale metric-based experiments. The first explores how the core algorithm behaves under changes to initial conditions. The second looks at extending the force-directed layout algorithm with additional forces to reduce overlaps. The third develops a novel symmetry metric for graphs and uses that to explore the symmetries of graphs. This thesis also carries out a user study to show that the differences reported by metrics in the graphs are reflected in a difference in user performance when using graphs for a free-form selection task.</p>

CoSEP: A compound spring embedder layout algorithm with support for ports

This paper describes a new automatic layout algorithm named CoSEP for compound graphs with port constraints. The algorithm works by extending the physical model of a previous algorithm named CoSE by defining additional force types and heuristics for constraining edges to connect to certain user-defined locations on end nodes. Similar to its predecessor, CoSEP also accounts for non-uniform node dimensions and arbitrary levels of nesting via compound nodes. Our experiments show that CoSEP significantly improves the quality of the layouts for compound graphs with port constraints with respect to commonly accepted graph drawing criteria while running reasonably fast, suitable for use in interactive applications for small to medium-sized (up to 500 nodes) graphs. A complete JavaScript implementation of CoSEP as a Cytoscape.js extension along with a demo page is freely available at https://github.com/iVis-at-Bilkent/cytoscape.js-cosep .