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Architecture and circuit design of parallel processing elements for de novo sequence assembly
2013 IEEE International SOC Conference
◽
10.1109/socc.2013.6749659
◽
2013
◽
Author(s):
Yu-Long Huang
◽
Chun-Shen Liu
◽
Yu-Cheng Li
◽
Yi-Chang Lu
Keyword(s):
Parallel Processing
◽
Circuit Design
◽
De Novo
◽
Sequence Assembly
◽
Processing Elements
◽
De Novo Sequence Assembly
Download Full-text
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References
Experimental Analysis of Recent Works on the Overlap Phase of De Novo Sequence Assembly
Journal of KIISE
◽
10.5626/jok.2018.45.3.200
◽
2018
◽
Vol 45
(3)
◽
pp. 200-210
Author(s):
Jihyuk Lim
◽
Sun Kim
◽
Kunsoo Park
Keyword(s):
Experimental Analysis
◽
De Novo
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Sequence Assembly
◽
De Novo Sequence Assembly
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An FPGA-based quality filter for de novo sequence assembly pipeline
2016 IEEE Asia Pacific Conference on Circuits and Systems (APCCAS)
◽
10.1109/apccas.2016.7803916
◽
2016
◽
Author(s):
Chun-Shen Liu
◽
Nae-Chyun Chen
◽
Yu-Cheng Li
◽
Yi-Chang Lu
Keyword(s):
De Novo
◽
Sequence Assembly
◽
Assembly Pipeline
◽
De Novo Sequence Assembly
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Peer Review #1 of "NxRepair: error correction in de novo sequence assembly using Nextera mate pairs (v0.2)"
10.7287/peerj.996v0.2/reviews/1
◽
2015
◽
Author(s):
AE Darling
Keyword(s):
Error Correction
◽
Peer Review
◽
De Novo
◽
Sequence Assembly
◽
De Novo Sequence Assembly
Download Full-text
De novo sequence assembly requires bioinformatic checking of chimeric sequences
PLoS ONE
◽
10.1371/journal.pone.0237455
◽
2020
◽
Vol 15
(8)
◽
pp. e0237455
Author(s):
Laila Sara Arroyo Mühr
◽
Camilla Lagheden
◽
Sadaf Sakina Hassan
◽
Sara Nordqvist Kleppe
◽
Emilie Hultin
◽
...
Keyword(s):
De Novo
◽
Sequence Assembly
◽
Chimeric Sequences
◽
De Novo Sequence Assembly
Download Full-text
De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)
BMC Genomics
◽
10.1186/1471-2164-13-439
◽
2012
◽
Vol 13
(1)
◽
pp. 439
◽
Cited By ~ 30
Author(s):
Hilary C Miller
◽
Patrick J Biggs
◽
Claudia Voelckel
◽
Nicola J Nelson
Keyword(s):
De Novo
◽
Sequence Assembly
◽
Sphenodon Punctatus
◽
De Novo Sequence Assembly
Download Full-text
De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes
BMC Genomics
◽
10.1186/1471-2164-12-503
◽
2011
◽
Vol 12
(1)
◽
Cited By ~ 86
Author(s):
Matthew G Links
◽
Eric Holub
◽
Rays HY Jiang
◽
Andrew G Sharpe
◽
Dwayne Hegedus
◽
...
Keyword(s):
De Novo
◽
Sequence Assembly
◽
Small Genome
◽
Albugo Candida
◽
De Novo Sequence Assembly
Download Full-text
Comparative study of five Legume species based on De Novo Sequence Assembly and Annotation
Computational Molecular Biology
◽
10.5376/cmb.2014.04.0009
◽
2014
◽
Author(s):
Sagar S. Patel
◽
Dipti B. Shah
◽
Hetalkumar J. Panchal
Keyword(s):
Comparative Study
◽
De Novo
◽
Sequence Assembly
◽
Legume Species
◽
De Novo Sequence Assembly
Download Full-text
De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing
PLoS ONE
◽
10.1371/journal.pone.0060449
◽
2013
◽
Vol 8
(4)
◽
pp. e60449
◽
Cited By ~ 27
Author(s):
Ren Wang
◽
Sheng Xu
◽
Yumei Jiang
◽
Jingwei Jiang
◽
Xiaodan Li
◽
...
Keyword(s):
454 Pyrosequencing
◽
De Novo
◽
Sequence Assembly
◽
Lycoris Aurea
◽
De Novo Sequence Assembly
Download Full-text
Feature-by-Feature – Evaluating De Novo Sequence Assembly
PLoS ONE
◽
10.1371/journal.pone.0031002
◽
2012
◽
Vol 7
(2)
◽
pp. e31002
◽
Cited By ~ 38
Author(s):
Francesco Vezzi
◽
Giuseppe Narzisi
◽
Bud Mishra
Keyword(s):
De Novo
◽
Sequence Assembly
◽
De Novo Sequence Assembly
Download Full-text
De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants
BMC Genomics
◽
10.1186/1471-2164-12-298
◽
2011
◽
Vol 12
(1)
◽
Cited By ~ 63
Author(s):
Rob W Ness
◽
Mathieu Siol
◽
Spencer CH Barrett
Keyword(s):
De Novo
◽
Sequence Assembly
◽
De Novo Sequence Assembly
◽
Floral Transcriptome
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