Speeding up scientific imaging workflows: Design of automated image annotation tool

Author(s):  
D. Colbry ◽  
F. Dyer ◽  
I. Dworkin ◽  
Yang Wang ◽  
Lifeng Wang
2014 ◽  
Vol 2014 ◽  
pp. 1-12 ◽  
Author(s):  
D. K. Iakovidis ◽  
T. Goudas ◽  
C. Smailis ◽  
I. Maglogiannis

Image segmentation and annotation are key components of image-based medical computer-aided diagnosis (CAD) systems. In this paper we present Ratsnake, a publicly available generic image annotation tool providing annotation efficiency, semantic awareness, versatility, and extensibility, features that can be exploited to transform it into an effective CAD system. In order to demonstrate this unique capability, we present its novel application for the evaluation and quantification of salient objects and structures of interest in kidney biopsy images. Accurate annotation identifying and quantifying such structures in microscopy images can provide an estimation of pathogenesis in obstructive nephropathy, which is a rather common disease with severe implication in children and infants. However a tool for detecting and quantifying the disease is not yet available. A machine learning-based approach, which utilizes prior domain knowledge and textural image features, is considered for the generation of an image force field customizing the presented tool for automatic evaluation of kidney biopsy images. The experimental evaluation of the proposed application of Ratsnake demonstrates its efficiency and effectiveness and promises its wide applicability across a variety of medical imaging domains.


Terminology ◽  
2019 ◽  
Vol 25 (2) ◽  
pp. 222-258 ◽  
Author(s):  
Pilar León-Araúz ◽  
Arianne Reimerink ◽  
Pamela Faber

Abstract Reutilization and interoperability are major issues in the fields of knowledge representation and extraction, as reflected in initiatives such as the Semantic Web and the Linked Open Data Cloud. This paper shows how terminological resources can be integrated and reused within different types of application. EcoLexicon is a multilingual terminological knowledge base (TKB) on environmental science that integrates conceptual, linguistic and visual information. It has led to the following by-products: (i) the EcoLexicon English Corpus; (ii) EcoLexiCAT, a terminology-enhanced translation tool; and (iii) Manzanilla, an image annotation tool. This paper explains EcoLexicon and its by-products, and shows how the latter exploit and enhance the data in the TKB.


2021 ◽  
Author(s):  
Tuomo Lahtinen ◽  
Hannu Turtiainen ◽  
Andrei Costin

2019 ◽  
Vol 6 ◽  
pp. 12-41
Author(s):  
Chris Dijkshoorn ◽  
Victor De Boer ◽  
Lora Aroyo ◽  
Guus Schreiber

With the increase of cultural heritage data published online, the usefulness of data in this open context hinges on the quality and diversity of descriptions of collection objects. In many cases, existing descriptions are not sufficient for retrieval and research tasks, resulting in the need for more specific annotations. However, eliciting such annotations is a challenge since it often requires domain-specific knowledge. Where crowdsourcing can be successfully used to execute simple annotation tasks, identifying people with the required expertise might prove troublesome for more complex and domain-specific tasks. Nichesourcing addresses this problem, by tapping into the expert knowledge available in niche communities. This paper presents Accurator, a methodology for conducting nichesourcing campaigns for cultural heritage institutions, by addressing communities, organizing events and tailoring a web-based annotation tool to a domain of choice. The contribution of this paper is fourfold: 1) a nichesourcing methodology, 2) an annotation tool for experts, 3) validation of the methodology in three case studies and 4) a dataset including the obtained annotations. The three domains of the case studies are birds on art, bible prints and fashion images. We compare the quality and quantity of obtained annotations in the three case studies, showing that the nichesourcing methodology in combination with the image annotation tool can be used to collect high-quality annotations in a variety of domains. A user evaluation indicates the tool is suited and usable for domain-specific annotation tasks.


2000 ◽  
Vol 7 (3) ◽  
pp. 61-71 ◽  
Author(s):  
R.K. Srihari ◽  
Z. Zhang

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