scholarly journals Using species distribution models to assess the long‐term impacts of changing oceanographic conditions on abalone density in south east Australia

Ecography ◽  
2020 ◽  
Vol 43 (7) ◽  
pp. 1052-1064 ◽  
Author(s):  
Mary A. Young ◽  
Eric A. Treml ◽  
Jutta Beher ◽  
Molly Fredle ◽  
Harry Gorfine ◽  
...  
2017 ◽  
Vol 74 (11) ◽  
pp. 1717-1731 ◽  
Author(s):  
Sara M. Turner ◽  
Jonathan A. Hare ◽  
John P. Manderson ◽  
David E. Richardson ◽  
John J. Hoey

Nontarget catch restrictions are becoming common in fisheries management. We test a potential tool for reducing nontargeted catch that combines species’ distribution models and ocean forecast models. We evaluated our approach for Atlantic herring (Clupea harengus), Atlantic mackerel (Scomber scombrus), alewife (Alosa pseudoharengus), and blueback herring (Alosa aestivalis). Catch of the latter two species is capped in commercial fisheries of the former two species. Ocean forecasts were derived from a data-assimilative ocean forecast model that predicts conditions 0–2 days into the future. Observed oceanographic conditions were derived from CTD casts and observed fish presence–absence was derived from fishery-independent bottom trawl collections. Species distribution models were used to predict presence–absence based on observed and forecasted oceanographic conditions, and predictions for both were very similar. Thus, most of the error in predicted distributions was generated by the species distribution models, not the oceanographic forecast model. Understanding how predictions based on forecasted conditions compare with predictions from observed conditions is key to developing an incidental catch forecast tool to help industry reduce nontarget catches.


2014 ◽  
Vol 39 (1) ◽  
pp. 218-224 ◽  
Author(s):  
Tiffany M. MCfarland ◽  
Joseph A. Grzybowski ◽  
Heather A. Mathewson ◽  
Michael L. Morrison

2021 ◽  
Author(s):  
Dirk Nikolaus Karger ◽  
Bianca Saladin ◽  
Rafael O. Wueest ◽  
Catherine H. Graham ◽  
Damaris Zurell ◽  
...  

Aim: Climate is an essential element of species' niche estimates in many current ecological applications such as species distribution models (SDMs). Climate predictors are often used in the form of long-term mean values. Yet, climate can also be described as spatial or temporal variability for variables like temperature or precipitation. Such variability, spatial or temporal, offers additional insights into niche properties. Here, we test to what degree spatial variability and long-term temporal variability in temperature and precipitation improve SDM predictions globally. Location: Global. Time period: 1979-2013. Major taxa studies: Mammal, Amphibians, Reptiles. Methods: We use three different SDM algorithms, and a set of 833 amphibian, 779 reptile, and 2211 mammal species to quantify the effect of spatial and temporal climate variability in SDMs. All SDMs were cross-validated and accessed for their performance using the Area under the Curve (AUC) and the True Skill Statistic (TSS). Results: Mean performance of SDMs with climatic means as predictors was TSS=0.71 and AUC=0.90. The inclusion of spatial variability offers a significant gain in SDM performance (mean TSS=0.74, mean AUC=0.92), as does the inclusion of temporal variability (mean TSS=0.80, mean AUC=0.94). Including both spatial and temporal variability in SDMs shows similarly high TSS and AUC scores. Main conclusions: Accounting for temporal rather than spatial variability in climate improved the SDM prediction especially in exotherm groups such as amphibians and reptiles, while for endotermic mammals no such improvement was observed. These results indicate that more detailed information about temporal climate variability offers a highly promising avenue for improving niche estimates and calls for a new set of standard bioclimatic predictors in SDM research.


2011 ◽  
Vol 178 (S1) ◽  
pp. S26-S43 ◽  
Author(s):  
V. M. Eckhart ◽  
M. A. Geber ◽  
W. F. Morris ◽  
E. S. Fabio ◽  
P. Tiffin ◽  
...  

2021 ◽  
Vol 13 (8) ◽  
pp. 1495
Author(s):  
Jehyeok Rew ◽  
Yongjang Cho ◽  
Eenjun Hwang

Species distribution models have been used for various purposes, such as conserving species, discovering potential habitats, and obtaining evolutionary insights by predicting species occurrence. Many statistical and machine-learning-based approaches have been proposed to construct effective species distribution models, but with limited success due to spatial biases in presences and imbalanced presence-absences. We propose a novel species distribution model to address these problems based on bootstrap aggregating (bagging) ensembles of deep neural networks (DNNs). We first generate bootstraps considering presence-absence data on spatial balance to alleviate the bias problem. Then we construct DNNs using environmental data from presence and absence locations, and finally combine these into an ensemble model using three voting methods to improve prediction accuracy. Extensive experiments verified the proposed model’s effectiveness for species in South Korea using crowdsourced observations that have spatial biases. The proposed model achieved more accurate and robust prediction results than the current best practice models.


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