Does Recruitment trigger negative Density-Dependent Feedback loops in Stream-Dwelling Salmonids?

I explored the hypothesis that recruitment may stabilize the numerical dynamics of stream-dwelling salmonids by triggering density-dependent feedback loops through the operation of recruitment-dependence on individual growth, mortality, life span and maximum size and their effects on fecundity. I examined 98 cohorts of two Salmo trutta populations of northern Spain and a population of Jutland (Denmark) located 2400 km apart Recruitment, growth, mortality, life span and maximum size were inter-related, were recruitment-dependent and described negative power trajectories. In the Spanish populations, faster growing individuals of weakly recruited cohorts with lower mortality attain longer life span and larger size. Hence, larger females spawning more abundant, larger eggs that, in turn, induce stronger cohorts of higher spawners’ abundance, recruitment and mortality. The mortality patterns match the self-thinning patterns, an ultimate expression of competition. Significant relationships among self-thinning slopes and mortalities rates with increasing recruitment demonstrate that the rate at which density-driven mortality is higher, the stronger the intensity of intraspecific competition. Space-limited habitat and size-dependent resource availability underpinning site-specific carrying capacities suggest that interference competition is the primary mechanism underpinning population regulation.

Opposing trends in survival and recruitment slow the recovery of a historically overexploited fishery

Quantifying temporal variation in demographic rates is a central goal of population ecology. In this study, we analyzed a multidecadal age-structured time series of Arctic charr (Salvelinus alpinus) abundance in Lake Mývatn, Iceland, to infer the time-varying demographic response of the population to reduced harvest in the wake of the fishery's collapse. Our analysis shows that while survival probability of adults increased following the alleviation of harvesting pressure, per capita recruitment consistently declined over most of the study period, until the final three years when it began to increase. The countervailing demographic trends resulted in only limited directional change in the total population size and population growth rate. Rather, the population dynamics were dominated by large interannual variability and a shift towards an older age distribution. Our results are indicative of a slow recovery of the population after its collapse, despite the rising number of adults following relaxed harvest. This underscores the potential for heterogeneous demographic responses to management efforts due to the complex ecological context in which such efforts take place.

Machine learning applied to lentic habitat use by spawning walleye demonstrates the benefits of considering multiple spatial scales in aquatic research

Scale and hierarchy have received less attention in aquatic systems compared to terrestrial. Walleye Sander vitreus spawning habitat offers an opportunity to investigate scale’s importance. We estimated lake-, transect-, and quadrat-scale influences on nearshore walleye egg deposition in 28 Minnesota lakes from 2016-2018. Random forest models (RFM) estimated importance of predictive variables to walleye egg deposition. Predictive accuracies of a multi-scale classification tree (CT) and a quadrat-scale CT were compared. RFM results suggested that five of our variables were unimportant when predicting egg deposition. The multi-scale CT was more accurate than the quadrat-scale CT when predicting egg deposition. Both model results suggest that in-lake egg deposition by walleye is regulated by hierarchical abiotic processes and that silt/clay abundance at the transect-scale (reef-scale) is more important than abundance at the quadrat-scale (within-reef). Our results show machine learning can be used for scale-optimization and potentially to determine cross-scale interactions. Further incorporation of scale and hierarchy into studies of aquatic systems will increase our understanding of species-habitat relationships, especially in lentic systems where multi-scale approaches are rarely used.

The effect of sea surface temperature on the structure and connectivity of species landings interaction networks in a multispecies recreational fishery.

Multispecies fisheries, particularly those that routinely adapt the timing, location, and methods of fishing to prioritize fishery targets, present a challenge to traditional single-species management approaches. Efforts to develop robust management for multispecies fisheries require an understanding of how priorities drive the network of interactions between catch of different species, especially given the added challenges presented by climate change. Using 35 years of landings data from a southern California recreational fishery, we leveraged empirical dynamic modelling methods to construct causal interaction networks among the main species targeted by the fishery. We found strong evidence for dependencies among species landings time series driven by apparent hierarchical catch preference within the fishery. In addition, by parsing the landings time series into anomalously cool, normal, and anomalously warm regimes (the last reflecting ocean temperatures anticipated by 2040), we found that network complexity was highest during warm periods. Our findings suggest that as ocean temperatures continue to rise, so too will the risk of unintended consequences from single species management in this multispecies fishery.

Detecting Population Regulation of Winter Flounder from Noisy Data

Year-class size of marine fish is thought to be determined during the first year of life, with density-dependent mortality during the larval or juvenile stages. However, investigations of such dynamics are often limited by data availability. To test this paradigm for winter flounder (Pseudopleuronectes americanus) in Narragansett Bay, Rhode Island, the abundances of 29 year classes moving through seven life stages were analyzed with a novel extension of key-factor analysis. Evidence of density dependence was identified between the egg and July young-of-the-year stages and high process-error variance was detected throughout the life cycle, suggesting year-class size is not fully determined until age-2. However, the first summer appeared to be a critical life stage for winter flounder, during which high temperatures, hypoxia, and predator abundance contributed to increased mortality rates behind a long-term population decline. Due to its general data requirements, the key-factor analysis method developed here may be applied to other marine populations to identify the impacts of external stressors at particular life stages and the degree to which they are compensated by density-dependent processes.

Paleolimnological perspectives on the shifting geographic template of permafrost landscapes and its implications for Arctic freshwater biodiversity

Geographic context matters when trying to understand how permafrost thaw impacts northern freshwater biodiversity in a warming climate. Most risk to freshwater from thawing permafrost is associated with abrupt thaw processes known as thermokarst. Lake sediments can provide a record of thermokarst landscape development and associated biogeochemical and biodiversity trends over long timescales, providing a tool to link thermokarst geomorphology with freshwater biodiversity. We describe how paleolimnology, with its inherent emphasis on long-term perspectives, can characterize the shifting geographic template of warming thermokarst landscapes and its implications for biodiversity. We suggest aligning thermokarst lake paleolimnological research with hypothesis-testing frameworks used by permafrost hydrologists and biogeochemists and by the Freshwater Circumpolar Biodiversity Monitoring Program, and advocate for knowledge co-production with northern Indigenous communities. Lastly, we stress the importance of considering geographic context in the choice of study sites to ensure that diverse thermokarst landscapes are represented (especially those most vulnerable to warming) and that the fine-scale differences in limnological settings that influence ecosystem response to thermokarst stressors are accounted for.

Spatial and Temporal Differences in Fecundity of Atlantic Herring (Clupea harengus) off Nova Scotia and Consequences for Biological Reference Points

The relationships between fecundity and size of Atlantic herring (Clupea harengus) were estimated within five different spawning areas off the coast of Nova Scotia in 2019 and 2020. Statistically significant differences in fecundity relative to body weight were observed among spawning areas and between years. Fecundity-at-length on the German Bank spawning ground was 29-36% and 22-28% lower than estimates from 2001 and 1970, respectively. Temporal changes in weight- and relative fecundity- at-age resulted in a decrease in the number of eggs-per-recruit (in an equilibrium unfished state) by 50% and a decrease of 27% in the egg production per tonne of spawning stock biomass (SSB) in 2020 relative to 1970. Decreases in SSB-per-recruit and eggs-per-recruit over time resulted in proportional decreases in equilibrium SSB at maximum sustainable yield (MSY); however, the fishing mortality rate (F) at MSY remained relatively stable over time. Total egg production was shown to be disproportional to SSB. Equilibrium SSB at MSY was greater (and F at MSY lower) when estimated using eggs-per-recruit compared to SSB-per-recruit. Failing to account for fecundity and assuming that egg production is proportional to SSB resulted in an overestimate of stock status

Estimating target strength of young chum salmon (Oncorhynchus keta)

Although chum salmon (Oncorhynchus keta) is an important fishery resource in Japan, acoustic methods cannot be applied to biomass estimation because the target strength (TS) is unknown. This study clarified the TS for each fork length (FL: 5.5–33.5 cm) of young chum salmon inhabiting the Japanese coastal area to the Bering Sea by measuring free-swimming fish. The size dependences of the TS values were TSmean = 20 log10 FL – 68.0, for both 38 and 120 kHz. This facilitated the estimation of biomass of young salmon using acoustic methods.

Summer stream habitat preferences of Nunavik anadromous Arctic char (Salvelinus alpinus) fry and parr

Arctic char is a fish species known to occupy diverse habitats within the Arctic region. However, summer habitat use during the juvenile stage of the anadromous form is largely unknown. The present study aims to characterize fry and parr summer habitat preferences. Surveys were conducted by electrofishing, associated with physical habitat characterization on several rivers of the Ungava Bay, Nunavik, Canada. At the microhabitat and station scales, fry showed significant habitat preferences for shallow water and slow velocity. At the mesohabitat scale, fry showed a significant habitat selectivity for riffles. This habitat selectivity implies that habitat models can be built to evaluate the potential of habitat suitability for Arctic char fry. However, no significant habitat selectivity was found for parr. Parr size was nonetheless positively correlated with velocity, which was found to be a limitative factor for juvenile habitat use. This first attempt at modeling juvenile anadromous Arctic char habitat in rivers emphasizes the importance of selecting an appropriate spatial scale and reiterates the fact that parr showed relatively high plasticity in stream habitat selection.

Gut content metabarcoding reveals potential importance of fisheries discards consumption in marine fauna

Fisheries discards have become a source of concern for the perennation of marine resources. To reduce discards, the European Union adopted a Landing Obligation under the reform of its Common Fisheries Policy. However, food web consequences of reducing discards remain uncertain since their degree and pathway of reintegration are understudied. We used multi-marker DNA metabarcoding of gut contents and an ecological network approach to quantify marine fauna reliance on discarded fish and functional importance of discard consumers in coastal fishing grounds. We show that potential discard consumption is widespread across fish and invertebrates, but particularly important for decapods which were also pinpointed as functionally important. Potential discard consumption may represent up to 66% of all interactions involving fish prey in the reconstructed network. We highlight that discard reliance may be more important than previously assessed in some fishing areas and support functionally important taxa. While reducing discarding remains a conservation priority, it is crucial to understand discards reintegration in marine food webs to anticipate changes in the context of an ecosystem approach to fisheries management.