Landscape Evolution as a Diversification Driver in Freshwater Fishes

The exceptional concentration of vertebrate diversity in continental freshwaters has been termed the “freshwater fish paradox,” with > 15,000 fish species representing more than 20% of all vertebrate species compressed into tiny fractions of the Earth’s land surface area (<0.5%) or total aquatic habitat volume (<0.001%). This study asks if the fish species richness of the world’s river basins is explainable in terms of river captures using topographic metrics as proxies. The River Capture Hypothesis posits that drainage-network rearrangements have accelerated biotic diversification through their combined effects on dispersal, speciation, and extinction. Yet rates of river capture are poorly constrained at the basin scale worldwide. Here we assess correlations between fish species density (data for 14,953 obligate freshwater fish species) and basin-wide metrics of landscape evolution (data for 3,119 river basins), including: topography (elevation, average relief, slope, drainage area) and climate (average rainfall and air temperature). We assess the results in the context of both static landscapes (e.g., species-area and habitat heterogeneity relationships) and transient landscapes (e.g., river capture, tectonic activity, landscape disequilibrium). We also relax assumptions of functional neutrality of basins (tropical vs. extratropical, tectonically stable vs. active terrains). We found a disproportionate number of freshwater species in large, lowland river basins of tropical South America, Africa, and Southeast Asia, under predictable conditions of large geographic area, tropical climate, low topographic relief, and high habitat volume (i.e., high rainfall rates). However, our results show that these conditions are only necessary, but not fully sufficient, to explain the basins with the highest diversity. Basins with highest diversity are all located on tectonically stable regions, places where river capture is predicted to be most conducive to the formation of high fish species richness over evolutionary timescales. Our results are consistent with predictions of several landscape evolution models, including the River Capture Hypothesis, Mega Capture Hypothesis, and Intermediate Capture Rate Hypothesis, and support conclusions of numerical modeling studies indicating landscape transience as a mechanistic driver of net diversification in riverine and riparian organisms with widespread continental distributions.

Microanatomy of the antennal glands and their Na+/K+-ATPase activity in three true crab species (Brachyura), Portunus pelagicus (Linnaeus, 1758) (Portunidae), Macrophthalmus dentipes Lucas in Guérin, 1836 (Macrophthalmidae) and Eriocheir hepuensis Dai, 1991 (Varunidae)

There are differences between various crab species in the function and structure of organs involved in ionic and osmotic regulation processes. The antennal glands together constitute one of the most important organs involved in the osmoregulation in crabs. The present investigation aimed to study the tissue structure of the antennal glands and their Na+/K+-ATPase (NKA) pump activity in three true crab species from three different habitats, including the marine (Portunus pelagicus (Linnaeus, 1758)), the estuarine (Macrophthalmus dentipes Lucas in Guérin, 1836) and the freshwater habitat (Eriocheir hepuensis Dai, 1991). In this regard, the tissue structure of the antennal glands and the activity of the Na+/K+-ATPase (NKA) pump were assessed in these three selected species. The results showed that the antennal glands in all studied species consisted of two anterior parts and a posterior part. The anterior parts are composed of the proximal tubular region (PT) and the distal tubular region (DT). The PT and DT parts comprised the coelomosac and labyrinths in the anterior portion, and the bladder located in the posterior portion. However, despite the similarity in the general tissue structure of the antennal gland in marine, estuarine and freshwater crab species, some structural differences were observed between those species. Labyrinth cells, coelomosac podocytes, and bladder cells in the estuarine crab M. dentipes contained large vacuoles especially on the top (i.e., near the lumen) of the cells. The highest amount of NKA pump activity was measured in the antennal glands of M. dentipes (). The NKA pump plays a more important role in the estuary and seawater adaptation of crabs, but freshwater species are not highly dependent on the NKA enzyme for osmoregulation.

Water Exchange Between the Gulf of Ob and the Kara Sea During Ice-Free Seasons: The Roles of River Discharge and Wind Forcing

The Gulf of Ob is among the largest estuaries in the World Ocean in terms of area, watershed basin, and freshwater discharge. In this work, we describe the roles of river discharge and wind forcing on the water exchange between the Gulf of Ob and the Kara Sea during ice-free seasons. This work is based on the extensive in situ measurements performed during 10 oceanographic surveys in 2007–2019. Due to large river runoff (∼530 km3 annually) and low tidal forcing (<0.5 m/s), the estuarine processes in the Gulf of Ob during the ice-free season are generally governed by gravitational circulation. Local wind forcing significantly affects general estuarine circulation and mixing only in rare cases of strong winds (∼10 m/s). On the other hand, remote wind forcing over the central part of the Kara Sea regularly intensifies estuarine—sea water exchange. Eastern winds in the central part of the Kara Sea induce upwelling in the area adjacent to the Gulf of Ob, which increases the barotropic pressure gradient between the gulf and the open sea. As a result, intense and distant (120–170 km) inflows of saline water to the gulf occur as compared to the average conditions (50–70 km). Remote wind forcing has a far stronger impact on saltwater intrusion into the Gulf of Ob than the highly variable river discharge rate. In particular, saltwater reaches the shallow central part of the gulf only during upwelling-induced intense inflows. In the other periods (even under low discharge conditions), fresh river water occupies this area from surface to bottom. The upwelling-induced intense inflows occur on average during a quarter of days (July to October) when the gulf is free of ice. They substantially increase the productivity of phytoplankton communities in the gulf and modify the taxa ratio toward the increase of brackish water species and the decrease of freshwater species.

Experimental sound exposure modifies swimming activities and increases food handling error in zebrafish (Danio rerio)

Anthropogenic sound is currently recognized as a source of environmental pollution in terrestrial and aquatic habitats. Elevated sound levels may cause a broad range of impacts on aquatic organisms among taxa. Sound is an important sensory stimulus for aquatic organisms and it may cause fluctuations in stress-related physiological indices and in a broader extent induce behavioural effects such as driving as a distracting stimulus, masking important relevant acoustic signals and cues in a range of marine and freshwater species. However, sound exposure may also induce changes in swimming activities, feed efficiency and productivity of available food sources in fish. Here, we experimentally tested sound effects on swimming activities and foraging performance in thirty adult Zebrafish (Danio rerio) individually in captivity. We used adult zebrafish and water flea (Daphnia magna) as model predator prey, respectively. We also used four sound treatments with different temporal patterns (all in the same frequency range and moderate exposure level). Our results constitute strong evidence for clear sound-related effects on zebrafish behaviour. All sound treatments induced a significant increase in the number of startle response, brief and prolonged swimming speed for zebrafish (P<0.05). Zebrafish reached to the baseline swimming speed after 60 seconds in all treatments. We found partially brief and prolonged sound effects on spatial distribution of zebrafish; Although we did not find any significant sound-related behavioural changes for horizontal spatial displacement in all treatments (P>0.05), zebrafish swam significantly more in the lower layer of the fish tank except irregular intermittent 1:1-7 in brief sound exposure (P<0.05). The results of foraging performance showed that food discrimination error was low for the zebrafish and unaffected by sound treatments (P>0.05). However, food handling error was affected by sound treatments; all treatments caused a rise in handling error (P<0.001). This study highlights the impact of sound on zebrafish swimming activities, and that more attacks are needed to consume the same number of prey items under noisy conditions.

Mathematical Modeling of the Phytoplankton Populations Geographic Dynamics for Possible Scenarios of Changes in the Azov Sea Hydrological Regime

Increased influence of abiotic and anthropogenic factors on the ecological state of coastal systems leads to uncontrollable changes in the overall ecosystem. This paper considers the crucial problem of studying the effect of an increase in the water’s salinity in the Azov Sea and the Taganrog Bay on hydrobiological processes. The main aim of the research is the diagnostic and predictive modeling of the geographic dynamics of the general phytoplankton populations. A mathematical model that describes the dynamics of three types of phytoplankton is proposed, considering the influence of salinity and nutrients on algae development. Discretization is carried out based on a linear combination of Upwind Leapfrog difference schemes and a central difference scheme, which makes it possible to increase the accuracy of solving the biological kinetics problem at large values of the grid Péclet number (Peh > 2). A software package has been developed that implements interrelated models of hydrodynamics and biogeochemical cycles. A modified alternating-triangular method was used to solve large-dimensional systems of linear algebraic equations (SLAE). Based on the scenario approach, several numerical experiments were carried out to simulate the dynamics of the main species of phytoplankton populations at different levels of water salinity in coastal systems. It is shown that with an increase in the salinity of waters, the habitats of phytoplankton populations shift, and marine species invasively replace freshwater species of algae.

Genetic variation in westslope cutthroat trout reveals that widespread genetic rescue is warranted

Although human fragmentation of freshwater habitats is ubiquitous, the genetic consequences of isolation and a roadmap to address them are poorly documented for most fishes. This is unfortunate, because translocation for genetic rescue could help mitigate problems. We used genetic data (32 SNPs) from 203 populations of westslope cutthroat trout to (1) document the effect of fragmentation on genetic variation and population structure, (2) identify candidate populations for genetic rescue, and (3) quantify the potential benefits of strategic translocation efforts. Human-isolated populations had substantially lower genetic variation and elevated genetic differentiation, indicating that many populations are strongly influenced by random genetic drift. Based on simple criteria, 23 populations were candidates for genetic rescue, which represented a majority (51%) of suitable populations in one major region (Missouri drainage). Population genetic theory suggests that translocation of a small number of individuals (~5 adults) from nearby populations could dramatically increase heterozygosity by up to 58% (average across populations). This effort provides a clear template for future conservation of westslope cutthroat trout, while simultaneously highlighting the potential need for similar efforts in many freshwater species.

Integrating transcriptomes to investigate genes associated with adaptation to aquatic environments, and assess phylogenetic conflict and whole-genome duplications in Alismatales

Land plants first evolved from freshwater algae, and flowering plants returned to water as early as the Cretaceous and multiple times beyond. Alismatales is the largest clade of aquatic angiosperms including all marine angiosperms, as well as terrestrial plants. We used Alismatales to explore plant adaptation to aquatic environments by including 95 samples (89 Alismatales species) covering four genomes and 91 transcriptomes (59 generated in this study). To provide a basis for investigating adaptation, we assessed phylogenetic conflict and whole-genome duplication (WGD) events in Alismatales. We recovered a relationship for the three main clades in Alismatales as ((Tofieldiaceae, Araceae), core Alismatids). There is phylogenetic conflict among the backbone of the three main clades that could be due to incomplete lineage sorting and introgression. We identified 18 putative WGD events. One of them had occurred at the most recent common ancestor of core Alismatids, and four occurred at seagrass lineages. Other events are distributed in terrestrial, emergent, and submersed life-forms and seagrasses across Alismatales. We also found that lineage and life-form were each important for different evolutionary patterns for the genes related to freshwater/marine adaptation. For example, some light or ethylene-related genes were lost in the seagrass Zosteraceae, but present in other seagrasses and freshwater species. Stomata-related genes were lost in both submersed freshwater species and seagrasses. Nicotianamine synthase genes, which are important in iron intake, expanded in both submersed freshwater species and seagrasses. Our results advance the understanding of the adaptation to aquatic environments, phylogeny, and whole-genome duplication of Alismatales.

(Un)expected Similarity of the Temporary Adhesive Systems of Marine, Brackish, and Freshwater Flatworms

Many free-living flatworms have evolved a temporary adhesion system, which allows them to quickly attach to and release from diverse substrates. In the marine Macrostomum lignano, the morphology of the adhesive system and the adhesion-related proteins have been characterised. However, little is known about how temporary adhesion is performed in other aquatic environments. Here, we performed a 3D reconstruction of the M. lignano adhesive organ and compared it to the morphology of five selected Macrostomum, representing two marine, one brackish, and two freshwater species. We compared the protein domains of the two adhesive proteins, as well as an anchor cell-specific intermediate filament. We analysed the gene expression of these proteins by in situ hybridisation and performed functional knockdowns with RNA interference. Remarkably, there are almost no differences in terms of morphology, protein regions, and gene expression based on marine, brackish, and freshwater habitats. This implies that glue components produced by macrostomids are conserved among species, and this set of two-component glue functions from low to high salinity. These findings could contribute to the development of novel reversible biomimetic glues that work in all wet environments and could have applications in drug delivery systems, tissue adhesives, or wound dressings.