New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

2009 ◽  
Vol 9 (1) ◽  
pp. 51-60 ◽  
Author(s):  
ALICE VALENTINI ◽  
CHRISTIAN MIQUEL ◽  
MUHAMMAD ALI NAWAZ ◽  
EVA BELLEMAIN ◽  
ERIC COISSAC ◽  
...  
2015 ◽  
Vol 11 (1) ◽  
Author(s):  
Teresa Santos ◽  
Carlos Fonseca ◽  
Tânia Barros ◽  
Raquel Godinho ◽  
Cristiane Bastos-Silveira ◽  
...  

DNA Barcodes ◽  
2015 ◽  
Vol 3 (1) ◽  
Author(s):  
Timothy J. Bartley ◽  
Heather E. Braid ◽  
Kevin S. McCann ◽  
Nigel P. Lester ◽  
Brian J. Shuter ◽  
...  

AbstractFood webs are important in understanding the structure, function, and behaviour of ecosystems, but, due to methodological limitations, are often poorly resolved in ways that impact food-web properties. Although DNA barcoding has proven useful in determining the diet of consumers, few studies have used this technique to determine food-web structure. These studies report mixed impacts on various food-web properties, but are limited by their taxonomic focus and their failure to evaluate DNA barcoding for both diet analysis and food-web structure. In this study, we show that, when compared to a morphological approach, DNA barcoding increases foodweb resolution by increasing the number and frequency of prey species identified in the stomach contents of eight species of Canadian boreal shield predatory fishes. In addition, we observed differences in food-web structure, such as increased generalism, habitat coupling, and omnivory, that have strong implications for food-web stability and dynamics. We conclude that DNA barcoding is a powerful tool to evaluate how resolution impacts foodweb properties and can help further our understanding of how food webs are structured by identifying feeding interactions in an unprecedented and highly detailed manner.


2017 ◽  
Vol 30 ◽  
pp. 1 ◽  
Author(s):  
S. Avignon ◽  
E. Tastard ◽  
S. Weston ◽  
G. Duhamel ◽  
F. Denis

The gilthead seabream, Sparus aurata, is common in the Mediterranean Sea and along the Atlantic coasts of Portugal, Spain and France. Abundance of S. aurata has recently increased along the Brittany coast, showing good adaptation and acclimatisation to northern waters away from its original distribution range. The physiological adaptations (diet, reproduction, growth) of this fish to colder water could even lead to its colonisation of the English Channel. The ability to eat and digest hard prey makes this fish an important consumer of bivalves. The aim of this study was to make a preliminary evaluation of the diet of the gilthead seabream in its northern range of distribution. Prey items from stomach contents of wild adults from various sites along the East Atlantic coast of France to the English Channel were identified morphologically when it was possible, e.g. in presence of decapod appendices, shells of bivalves, or using DNA barcoding. Diet composition was analysed against sites, fish length and month of sampling using the frequency of occurrence (%F) and weight relative proportion (%W). Results showed that the diet of S. aurata was mainly composed of bivalves, malacostracans and gastropods with a huge dominance of Mytilus sp. (%F = 51.5 and %W = 40.2). This first diet analysis of individuals from the northern range of the species distribution showed its ability, as an opportunistic feeder, to find prey in newly colonised ecosystems and its preference for some organisms, especially mussels.


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