Evaluating the genetic effects of seed dormancy regulatory genes Qsd1 and Qsd2 in a global collection of cultivated barley ( Hordeum vulgare ssp. vulgare ) with functional kompetitive allele‐specific PCR markers

2021 ◽  
Author(s):  
Luxi Yan ◽  
Congcong Jiang ◽  
Yu Cai ◽  
Yuhan Pan ◽  
Rugen Xu ◽  
...  
Keyword(s):  
Hordeum Vulgare ◽  
Seed Dormancy ◽  
Genetic Effects ◽  
Regulatory Genes ◽  
Pcr Markers ◽  
Specific Pcr ◽  
Allele Specific ◽  
Cultivated Barley ◽  
Allele Specific Pcr ◽  
Hordeum Vulgare Ssp

Identification of SNPs and development of allele-specific PCR markers for γ-gliadin alleles in Triticum aestivum

2003 ◽  
Vol 107 (1) ◽  
pp. 130-138 ◽  
Author(s):  
W. Zhang ◽  
M. C. Gianibelli ◽  
W. Ma ◽  
L. Rampling ◽  
K. R. Gale
Keyword(s):  
Triticum Aestivum ◽  
Pcr Markers ◽  
Specific Pcr ◽  
Allele Specific ◽  
Gliadin Alleles ◽  
Allele Specific Pcr

Development of Kompetitive Allele Specific PCR Markers for Anaerobic Germination 1 Locus in Rice

2021 ◽  
Vol 9 (1) ◽  
pp. 20-31
Author(s):  
Jung-Woo Lee ◽  
Joong Hyoun Chin ◽  
Soo-Cheul Yoo
Keyword(s):  
Pcr Markers ◽  
Specific Pcr ◽  
Anaerobic Germination ◽  
Allele Specific ◽  
Allele Specific Pcr

scholarly journals Development of diagnostic PCR and LAMP markers for MALE STERILITY 1 (MS1) in Cryptomeria japonica D. Don

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Yoichi Hasegawa ◽  
Saneyoshi Ueno ◽  
Fu-Jin Wei ◽  
Asako Matsumoto ◽  
Tokuko Ujino-Ihara ◽  
...  
Keyword(s):  
Male Sterility ◽  
Cryptomeria Japonica ◽  
Lamp Method ◽  
Pcr Markers ◽  
Causative Gene ◽  
Laboratory Equipment ◽  
Diagnostic Pcr ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr

Abstract Objective Due to the allergic nature of the pollen of Cryptomeria japonica, the most important Japanese forestry conifer, a pollen-free cultivar is preferred. Mutant trees detected in nature have been used to produce a pollen-free cultivar. In order to reduce the time and cost needed for production and breeding, we aimed to develop simple diagnostic molecular markers for mutant alleles of the causative gene MALE STERILITY 1 (MS1) in C. japonica to rapidly identify pollen-free mutants. Results We developed PCR and LAMP markers to detect mutant alleles and to present experimental options depending on available laboratory equipment. LAMP markers were developed for field stations, where PCR machines are unavailable. The LAMP method only needs heat-blocks or a water bath to perform the isothermal amplification and assay results can be read by the naked eye. Because the causative mutations were deletions, we developed two kinds of PCR markers, amplified length polymorphism (ALP) and allele specific PCR (ASP) markers. These assays can be visualized using capillary or agarose gel electrophoresis.

scholarly journals Interaction between Glu-A1 and Glu-D1 alleles in physical dough property in Japanese soft wheats and development of allele-specific PCR markers for Glu-A1

2008 ◽  
Vol 10 (2) ◽  
pp. 41-48 ◽  
Author(s):  
Kanenori Takata ◽  
Mikiko Yanaka ◽  
Tatsuya M. Ikeda ◽  
Naoyuki Ishikawa
Keyword(s):  
Pcr Markers ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr ◽  
Dough Property

scholarly journals Development of diagnostic PCR and LAMP markers for MALE STERILITY 1 (MS1) in Cryptomeria japonica D. Don

2020 ◽  
Author(s):  
Yoichi Hasegawa ◽  
Saneyoshi Ueno ◽  
Fu-Jin Wei ◽  
Asako Matsumoto ◽  
Tokuko Ujino-Ihara ◽  
...  
Keyword(s):  
Male Sterility ◽  
Cryptomeria Japonica ◽  
Agarose Gel Electrophoresis ◽  
Pcr Markers ◽  
Causative Gene ◽  
Laboratory Equipment ◽  
Diagnostic Pcr ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr

AbstractObjectiveDue to the allergic nature of the pollen of Cryptomeria japonica, the most important Japanese forestry conifer, a pollen-free cultivar is preferred. Mutant trees detected in nature have been used for the production of a pollen-free cultivar. In order to reduce the time and cost needed for the production and breeding, we aimed to develop simple diagnostic molecular markers for mutant alleles of the causative gene MALE STERILITY 1 (MS1) in C. japonica. The expected function of this gene, its two dysfunctional mutations, and genetic diversity were described recently in a related study.ResultsWe have developed PCR and LAMP markers to detect mutant alleles and to present experimental options depending on available laboratory equipment. At field stations, where PCR machines are not available, LAMP markers were developed. LAMP only needs heat-blocks or a water bath to perform the isothermal amplification and assay results can be easily seen by eye. Because the causative mutations were deletions, two kinds of PCR markers, amplified length polymorphism (ALP) and allele specific PCR (ASP) markers, were developed. These assays can be carried out by capillary or agarose gel electrophoresis.

Development of Allele-specific PCR Markers for Tm22 Gene In Tomato

2013 ◽  
Vol 13 (1) ◽  
pp. 34-39
Author(s):  
Feng-Mei Jin ◽  
Xue Jun ◽  
Song Jian ◽  
Zhong-Qi Liu ◽  
Xue Lin
Keyword(s):  
Pcr Markers ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr

Development of Kompetitive Allele Specific PCR Markers for Submergence Tolerant Gene Sub1 in Rice

2019 ◽  
Vol 7 (1) ◽  
pp. 62-66
Author(s):  
Je-Hoon Moon ◽  
Daniel Son ◽  
Jung-Woo Lee ◽  
Soo-Cheul Yoo
Keyword(s):  
Pcr Markers ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr

Development and Application of Allele-Specific PCR Markers for Imidazolinone-Resistant GeneBnALS1RinBrassica napus

2013 ◽  
Vol 39 (10) ◽  
pp. 1711 ◽  
Author(s):  
Mao-Long HU ◽  
Wei-Hua LONG ◽  
Jian-Qin GAO ◽  
San-Xiong FU ◽  
Feng CHEN ◽  
...  
Keyword(s):  
Pcr Markers ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr

Chromosome location and allele-specific PCR markers for marker-assisted selection of the oat crown rust resistance gene Pc91

2013 ◽  
Vol 32 (3) ◽  
pp. 679-686 ◽  
Author(s):  
B. N. Gnanesh ◽  
J. Mitchell Fetch ◽  
J. G. Menzies ◽  
A. D. Beattie ◽  
P. E. Eckstein ◽  
...  
Keyword(s):  
Resistance Gene ◽  
Marker Assisted Selection ◽  
Rust Resistance ◽  
Chromosome Location ◽  
Pcr Markers ◽  
Specific Pcr ◽  
Oat Crown Rust ◽  
Allele Specific ◽  
Allele Specific Pcr ◽  
Selection Of
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