Interactive 3D visualization tools for stereotactic atlas-based functional neurosurgery

1998 ◽  
Author(s):  
Philippe St. Jean ◽  
Reza Kasrai ◽  
Diego Clonda ◽  
Abbas F. Sadikot ◽  
Alan C. Evans ◽  
...  
NeuroImage ◽  
1998 ◽  
Vol 7 (4) ◽  
pp. S462
Author(s):  
Philippe St-Jean ◽  
Abbas F. Sadikot ◽  
Diego Clonda ◽  
Alan C. Evans ◽  
Terry M. Peters ◽  
...  

2021 ◽  
Author(s):  
Paula C Sanematsu

The development of physics-based 3D models that investigate the behavior of biological tissues requires effective and efficient visualization tools. The open-source software ParaView has such capabilities, but often impose a steep learning curve due to the use of the Visualization Toolkit (VTK) data structures. To overcome this, I show how to setup the components of 3D vertex-like models, i.e., vertices, faces, and polyhedra, into the VTK data format and then output as ParaView unstructured grid files. I present a few relevant tools to visualize and analyze the files in ParaView. All sample codes are available in the Github repository vis3Dvertex.


2018 ◽  
Vol 30 (7) ◽  
pp. 1268 ◽  
Author(s):  
Guodao Sun ◽  
Puyong Huang ◽  
Yipeng Liu ◽  
Ronghua Liang

2000 ◽  
Vol 6 (S2) ◽  
pp. 282-283
Author(s):  
Matthew Dougherty ◽  
Wah Chiu

Sophisticated tools are needed to examine the results of cyro-microscopy. As the size and resolution of three dimensional macromolecular structures steadily improve, and the speed at with which they can be generated increases, researchers are finding they are inundated with larger datasets and at the same time are compelled to expediently evaluate these structures in unforeseen ways. Integration of EM data with other types of information is becoming necessary and routine; for example X-ray data, 3D EM reconstructions, and theoretical models, must be evaluated in concert to discount or propose hypothesis. To create such tools, the developer must take into account not only the empirical and theoretical possibilities, but also they must master the human factors and computational limits. During the last five years, the National Center for Macromolecular Imaging (NCMI) has progressed from a remedial 3D visualization capability to a collection of visualization tools allowing researchers to focus on the discovery phase of biological research.


2018 ◽  
Vol 477 (2) ◽  
pp. 1495-1507 ◽  
Author(s):  
T Dykes ◽  
A Hassan ◽  
C Gheller ◽  
D Croton ◽  
M Krokos

Author(s):  
Dawei Xu ◽  
Lin Wang ◽  
Xin Wang ◽  
Dianquan Li ◽  
Jianpeng Duan ◽  
...  

2018 ◽  
pp. 31-63 ◽  
Author(s):  
Lukáš Herman ◽  
Tomáš Řezník ◽  
Zdeněk Stachoň ◽  
Jan Russnák

Various widely available applications such as Google Earth have made interactive 3D visualizations of spatial data popular. While several studies have focused on how users perform when interacting with these with 3D visualizations, it has not been common to record their virtual movements in 3D environments or interactions with 3D maps. We therefore created and tested a new web-based research tool: a 3D Movement and Interaction Recorder (3DmoveR). Its design incorporates findings from the latest 3D visualization research, and is built upon an iterative requirements analysis. It is implemented using open web technologies such as PHP, JavaScript, and the X3DOM library. The main goal of the tool is to record camera position and orientation during a user’s movement within a virtual 3D scene, together with other aspects of their interaction. After building the tool, we performed an experiment to demonstrate its capabilities. This experiment revealed differences between laypersons and experts (cartographers) when working with interactive 3D maps. For example, experts achieved higher numbers of correct answers in some tasks, had shorter response times, followed shorter virtual trajectories, and moved through the environment more smoothly. Interaction-based clustering as well as other ways of visualizing and qualitatively analyzing user interaction were explored.


Author(s):  
Matthias Wieczorek ◽  
André Aichert ◽  
Pascal Fallavollita ◽  
Oliver Kutter ◽  
Ahmad Ahmadi ◽  
...  

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