scholarly journals Packing A-paths in Group-Labelled Graphs via Linear Matroid Parity

Author(s):  
Yutaro Yamaguchi
2020 ◽  
Vol 12 (1) ◽  
Author(s):  
Jördis-Ann Schüler ◽  
Steffen Rechner ◽  
Matthias Müller-Hannemann

AbstractAn important task in cheminformatics is to test whether two molecules are equivalent with respect to their 2D structure. Mathematically, this amounts to solving the graph isomorphism problem for labelled graphs. In this paper, we present an approach which exploits chemical properties and the local neighbourhood of atoms to define highly distinctive node labels. These characteristic labels are the key for clever partitioning molecules into molecule equivalence classes and an effective equivalence test. Based on extensive computational experiments, we show that our algorithm is significantly faster than existing implementations within , and . We provide our Java implementation as an easy-to-use, open-source package (via GitHub) which is compatible with . It fully supports the distinction of different isotopes and molecules with radicals.


2015 ◽  
Vol 07 (02) ◽  
pp. 1550019
Author(s):  
Jinyu Huang

A maximum linear matroid parity set is called a basic matroid parity set, if its size is the rank of the matroid. We show that determining the existence of a common base (basic matroid parity set) for linear matroid intersection (linear matroid parity) is in NC2, provided that there are polynomial number of common bases (basic matroid parity sets). For graphic matroids, we show that finding a common base for matroid intersection is in NC2, if the number of common bases is polynomial bounded. To our knowledge, these algorithms are the first deterministic NC algorithms for matroid intersection and matroid parity. We also give a new RNC2 algorithm that finds a common base for graphic matroid intersection. We prove that if there is a black-box NC algorithm for Polynomial Identity Testing (PIT), then there is an NC algorithm to determine the existence of a common base (basic matroid parity set) for linear matroid intersection (linear matroid parity).


COMBINATORICA ◽  
1986 ◽  
Vol 6 (2) ◽  
pp. 123-150 ◽  
Author(s):  
Harold N. Gabow ◽  
Matthias Stallmann

2017 ◽  
Vol 61 ◽  
pp. 819-825 ◽  
Author(s):  
Joshua Lockhart ◽  
Otfried Gühne ◽  
Simone Severini

Author(s):  
Giovanni Bellettini ◽  
Valentina Beorchia ◽  
Maurizio Paolini ◽  
Franco Pasquarelli

2020 ◽  
Vol 284 ◽  
pp. 322-331
Author(s):  
Konstantinos Kaparis ◽  
Adam N. Letchford ◽  
Ioannis Mourtos

2009 ◽  
Vol 18 (4) ◽  
pp. 583-599 ◽  
Author(s):  
COLIN McDIARMID

A minor-closed class of graphs is addable if each excluded minor is 2-connected. We see that such a classof labelled graphs has smooth growth; and, for the random graphRnsampled uniformly from then-vertex graphs in, the fragment not in the giant component asymptotically has a simple ‘Boltzmann Poisson distribution’. In particular, asn→ ∞ the probability thatRnis connected tends to 1/A(ρ), whereA(x) is the exponential generating function forand ρ is its radius of convergence.


Sign in / Sign up

Export Citation Format

Share Document