Name Similarity for Composite Element Name Matching

Author(s):  
Naveen Ashish ◽  
Arihant Patawari ◽  
Simrat Singh Chhabra ◽  
Arthur W. Toga
2012 ◽  
Vol 26 (10) ◽  
pp. 3201-3212 ◽  
Author(s):  
Sang-Uk Cheon ◽  
Duhwan Mun ◽  
Soonhung Han ◽  
Byung Chul Kim

2006 ◽  
Vol 20 (4) ◽  
pp. 795-808 ◽  
Author(s):  
Chung S. Song ◽  
Ibtissam Echchgadda ◽  
Young-Kyo Seo ◽  
Taesung Oh ◽  
Soyoung Kim ◽  
...  

Abstract The vitamin D receptor (VDR) regulates steroid and drug metabolism by inducing the genes encoding phase I and phase II enzymes. SULT2A1 is a liver- and intestine-expressed sulfo-conjugating enzyme that converts the alcohol-OH of neutral steroids, bile acids, and drugs to water-soluble sulfated metabolites. 1α,25-Dihydroxyvitamin D3 [1,25-(OH)2D3] induces SULT2A1 gene transcription after the recruitment of VDR to the vitamin D-responsive chromatin region of SULT2A1. A composite element in human SULT2A1 directs the 1,25-(OH)2D3-mediated induction of natural and heterologous promoters. This element combines a VDR/retinoid X receptor-α-binding site [vitamin D response element (VDRE)], which is an imperfect inverted repeat 2 of AGCTCA, and a CAAT/enhancer binding protein (C/EBP)-binding site located 9 bp downstream to VDRE. The binding sites were identified by EMSA, antibody supershift, and deoxyribonuclease I footprinting. C/EBP-α at the composite element plays an essential role in the VDR regulation of SULT2A1, because 1) induction was lost for promoters with inactivating mutations at the VDRE or C/EBP element; 2) SULT2A1 induction by 1,25-(OH)2D3 in C/EBP-α-deficient cells required the expression of cotransfected C/EBP-α; and 3) C/EBP-β did not substitute for C/EBP-α in this regulation. VDR and C/EBP-α were recruited concurrently to the composite element along with the coactivators p300, steroid receptor coactivator 1 (SRC-1), and SRC-2, but not SRC-3. VDR and C/EBP-α associated endogenously as a DNA-dependent, coimmunoprecipitable complex, which was detected at a markedly higher level in 1,25-(OH)2D3-treated cells. These results provide the first example of the essential role of the interaction in cis between C/EBP-α and VDR in directing 1,25-(OH)2D3-induced expression of a VDR target gene.


2013 ◽  
Vol 2013 ◽  
pp. 1-10
Author(s):  
Ling Huang ◽  
Zhongrong Lv ◽  
Weihuan Chen ◽  
Jike Liu

An approach based on homotopy iteration algorithm is proposed to identify the crack parameters in beam structures. In the forward problem, a fully open crack model with the composite element method is employed for the vibration analysis. The dynamic responses of the cracked beam in time domain are obtained from the Newmark direct integration method. In the inverse analysis, an identification approach based on homotopy iteration algorithm is studied to identify the location and the depth of a cracked beam. The identification equation is derived by minimizing the error between the calculated acceleration response and the simulated measured one. Newton iterative method with the homotopy equation is employed to track the correct path and improve the convergence of the crack parameters. Two numerical examples are conducted to illustrate the correctness and efficiency of the proposed method. And the effects of the influencing parameters, such as measurement time duration, measurement points, division of the homotopy parameter and measurement noise, are studied.


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