scholarly journals Harmonization of PET image reconstruction parameters in simultaneous PET/MRI

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Richard Laforest ◽  
Mehdi Khalighi ◽  
Yutaka Natsuaki ◽  
Abhejit Rajagopal ◽  
Dharshan Chandramohan ◽  
...  

Abstract Objective Simultaneous PET/MRIs vary in their quantitative PET performance due to inherent differences in the physical systems and differences in the image reconstruction implementation. This variability in quantitative accuracy confounds the ability to meaningfully combine and compare data across scanners. In this work, we define image reconstruction parameters that lead to comparable contrast recovery curves across simultaneous PET/MRI systems. Method The NEMA NU-2 image quality phantom was imaged on one GE Signa and on one Siemens mMR PET/MRI scanner. The phantom was imaged at 9.7:1 contrast with standard spheres (diameter 10, 13, 17, 22, 28, 37 mm) and with custom spheres (diameter: 8.5, 11.5, 15, 25, 32.5, 44 mm) using a standardized methodology. Analysis was performed on a 30 min listmode data acquisition and on 6 realizations of 5 min from the listmode data. Images were reconstructed with the manufacturer provided iterative image reconstruction algorithms with and without point spread function (PSF) modeling. For both scanners, a post-reconstruction Gaussian filter of 3–7 mm in steps of 1 mm was applied. Attenuation correction was provided from a scaled computed tomography (CT) image of the phantom registered to the MR-based attenuation images and verified to align on the non-attenuation corrected PET images. For each of these image reconstruction parameter sets, contrast recovery coefficients (CRCs) were determined for the SUVmean, SUVmax and SUVpeak for each sphere. A hybrid metric combining the root-mean-squared discrepancy (RMSD) and the absolute CRC values was used to simultaneously optimize for best match in CRC between the two scanners while simultaneously weighting toward higher resolution reconstructions. The image reconstruction parameter set was identified as the best candidate reconstruction for each vendor for harmonized PET image reconstruction. Results The range of clinically relevant image reconstruction parameters demonstrated widely different quantitative performance across cameras. The best match of CRC curves was obtained at the lowest RMSD values with: for CRCmean, 2 iterations-7 mm filter on the GE Signa and 4 iterations-6 mm filter on the Siemens mMR, for CRCmax, 4 iterations-6 mm filter on the GE Signa, 4 iterations-5 mm filter on the Siemens mMR and for CRCpeak, 4 iterations-7 mm filter with PSF on the GE Signa and 4 iterations-7 mm filter on the Siemens mMR. Over all reconstructions, the RMSD between CRCs was 1.8%, 3.6% and 2.9% for CRC mean, max and peak, respectively. The solution of 2 iterations-3 mm on the GE Signa and 4 iterations-3 mm on Siemens mMR, both with PSF, led to simultaneous harmonization and with high CRC and low RMSD for CRC mean, max and peak with RMSD values of 2.8%, 5.8% and 3.2%, respectively. Conclusions For two commercially available PET/MRI scanners, user-selectable parameters that control iterative updates, image smoothing and PSF modeling provide a range of contrast recovery curves that allow harmonization in harmonization strategies of optimal match in CRC or high CRC values. This work demonstrates that nearly identical CRC curves can be obtained on different commercially available scanners by selecting appropriate image reconstruction parameters.

2020 ◽  
Author(s):  
Richard Laforest ◽  
Mehdi Khaligi ◽  
Yutaka Natsuaki ◽  
Abhejit Rajagopal ◽  
Dharshan Chandramohan ◽  
...  

Abstract Objective: Simultaneous PET/MRIs vary in their quantitative PET performance due to inherent differences in the physical systems and differences in the image reconstruction implementation. This variability in quantitative accuracy confounds the ability to meaningfully combine and compare data across scanners. In this work, we define image reconstruction hyperparameters that lead to comparable contrast recovery curves across simultaneous PET/MRI systems.Method: The NEMA NU-2 image quality phantom was imaged on one GE Signa and on one Siemens mMR PET/MRI scanner. The phantom was imaged at 9.8:1 contrast with standard spheres (diameter 10, 13, 17, 22, 28, 37mm) and with custom spheres (diameter: 8.5, 11.5, 15, 25, 32.5, 44 mm) using a standardized methodology. Analysis was performed on a 30 minute listmode data acquisition and on 6 realizations of 5 minutes from the listmode data. Images were reconstructed with the manufacturer provided iterative image reconstruction algorithms with and without point spread function (PSF) modeling. For both scanners, a post-reconstruction Gaussian filter of 3 to 7 mm in steps of 1 mm were applied. Attenuation correction was provided from a scaled Computed Tomography (CT) image of the phantom registered to the MR-based attenuation images and verified to align on the non-attenuated corrected PET images. For each of these image reconstruction parameter sets, contrast recovery coefficients (CRCs) were determined for the SUVmean, SUVmax and SUVpeak for each sphere. A hybrid metric combining the root mean squared discrepancy (RMSD) and the absolute CRC values were used to simultaneously optimize for best match in CRC between the two scanners while simultaneously weighting towards higher resolution reconstructions. The image reconstruction hyperparameter set were identified as the best candidate reconstruction for each vendor for harmonized PET image reconstruction. Results: The range of clinically relevant image reconstruction hyperparameters demonstrated widely different quantitative performance across cameras. The best match of CRC curves were obtained at the lowest RMSD values with: for CRCmean, 2 iterations -7mm filter with PSF on the GE Signa and 4 iterations -6mm filter on the Siemens mMR, for CRCmax, 2 iterations -7mm filter on the GE Signa, 4 iterations - 6mm filter on the Siemens mMR and for CRCeak, 4 iterations-7mm filter with PSF on the GE Signa and 3 iterations-6mm filter on the Siemens mMR. Over all reconstructions, the RMSD between CRCs were 2.4%, 3.1% and 2.3% for CRC mean, max and peak, respectively. The solution of 2 iterations-3mm on the GE Signa and 4 iterations-3mm on Siemens mMR, both with PSF, led to simultaneous harmonization and with high CRC and low RMSD for CRC mean, max and peak with RMSD values of 3.4%, 5.5% and 3.0 %, respectively.Conclusions: For two commercially-available PET/MRI scanners, user-selectable hyperparameters that control iterative updates, image smoothing, and PSF-modeling provide a range of contrast recovery curves that allow harmonization in harmonization strategies of optimal match in CRC or high CRC values. This work demonstrates that nearly identical CRC curves can be obtained on different commercially available scanners by selecting appropriate image reconstruction hyperparameters.


2020 ◽  
Author(s):  
Richard Laforest ◽  
Mehdi Khaligi ◽  
Yutaka Natsuaki ◽  
Dharshan Chandramohan ◽  
Darrin Byrd ◽  
...  

Abstract Background Simultaneous PET/MRIs vary in their quantitative PET performance due to inherent differences in the physical systems and differences in the image reconstruction implementation. This variability in quantitative accuracy confounds the ability to meaningfully combine and compare data across scanners. In this work, we define image reconstruction parameters that lead to comparable contrast recovery curves across simultaneous PET/MRI systems. Method: The NEMA NU-2 image quality phantom was imaged on the GE Signa and on the Siemens mMR PET/MRI scanners. The phantom was imaged at 9.8:1 contrast with standard spheres (diameter 10, 13, 17, 22, 28, 37 mm) and with custom spheres (diameter: 8.5, 11.5, 15, 25, 32.5, 44 mm) using a standardized methodology. Analysis was performed on a 30 minute data acquisition and on a subset of 5 minutes of data acquisition. Images were reconstructed with the manufacturer provided iterative image reconstruction algorithms with and without point spread function (PSF) modeling. For both scanners, a post-reconstruction Gaussian filter of 3 to 7 mm in steps of 1 mm were applied. Attenuation correction was provided from a scaled Computed Tomography (CT) image of the phantom registered to the MR-based attenuation images. For each of these image reconstruction parameter sets, contrast recovery coefficients (CRCs) were determined for the SUVmean, SUVmax and SUVpeak for each sphere. The root mean squared error (RMSE) was computed and used to rank the similarity of image reconstruction combination pairs for the two scanners. The image reconstruction parameter set with the lowest RMSE was identified as the best candidate reconstruction for each vendor for harmonized PET image reconstruction. Results The range of clinically relevant image reconstruction parameters demonstrated widely different quantitative performance across devices. The best match of CRC curves were obtained with: for SUVmean, 2 iterations/ 16 subsets − 7 mm filter with PSF on the GE Signa and 4 iterations/21 subsets-5 mm filter on the Siemens mMR, for SUVmax, 2 iterations/16 subsets-7 mm filter on the GE Signa, 4 iterations/21 subsets- 6 mm filter on the Siemens mMR and for SUVpeak, 4 iterations/16subsets-7 mm filter with PSF on the GE Signa and 4 iterations/21 subsets-5 mm filter on the Siemens mMR. Over all reconstructions, the RMSE between CRCs for the scanners were 8.1%, 16.7% and 7.1% for mean, max and peak, respectively. These were reduced to less than 2% for harmonized reconstruction settings. Conclusions For two commercially-available PET/MRI scanners, user-selectable parameters that control iterative updates, image smoothing, and PSF-modeling provide a range of contrast recovery curves that allow harmonization. This work demonstrates that nearly identical CRC curves can be obtained on different commercially available scanners by selecting appropriate image reconstruction parameters.


Author(s):  
Santosh Bhattacharyya

Three dimensional microscopic structures play an important role in the understanding of various biological and physiological phenomena. Structural details of neurons, such as the density, caliber and volumes of dendrites, are important in understanding physiological and pathological functioning of nervous systems. Even so, many of the widely used stains in biology and neurophysiology are absorbing stains, such as horseradish peroxidase (HRP), and yet most of the iterative, constrained 3D optical image reconstruction research has concentrated on fluorescence microscopy. It is clear that iterative, constrained 3D image reconstruction methodologies are needed for transmitted light brightfield (TLB) imaging as well. One of the difficulties in doing so, in the past, has been in determining the point spread function of the system.We have been developing several variations of iterative, constrained image reconstruction algorithms for TLB imaging. Some of our early testing with one of them was reported previously. These algorithms are based on a linearized model of TLB imaging.


2018 ◽  
Vol 56 ◽  
pp. 112
Author(s):  
R. Matheoud ◽  
F. Bergesio ◽  
C. Chiesa ◽  
E. De Ponti ◽  
S. Morzenti ◽  
...  

1997 ◽  
Vol 44 (4) ◽  
pp. 1558-1563 ◽  
Author(s):  
M.T. Chan ◽  
R.M. Leahy ◽  
E.U. Mumcouglu ◽  
S.R. Cherry ◽  
J. Czernin ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document