scholarly journals The genome sequence of the Australian filarial nematode, Cercopithifilaria johnstoni

2021 ◽  
Vol 6 ◽  
pp. 259
Author(s):  
Kirsty McCann ◽  
Warwick Grant ◽  
Stephen R. Doyle

We present a genome assembly and annotation of an individual female Cercopithifilaria johnstoni, a parasitic filarial nematode that is transmitted by hard ticks (Ixodidae) to infect a broad range of native Australian murid and marsupial hosts. The genome sequence is 76.9 Mbp in length, and although in draft form (N50 = 99 kbp, N50[n] = 232), is largely complete based on universally conserved orthologs (BUSCOs; genome = 94.9%, protein = 96.5%) and relative to other related filarial species. These data represent the first genomic resources for the genus Cercopithifilaria, a group of parasites with a broad host range, and form the basis for comparative analysis with the human-infective parasite, Onchocerca volvulus, both of which are responsible for similar eye and skin pathologies in their respective hosts.

2021 ◽  
Vol 6 ◽  
pp. 259
Author(s):  
Kirsty McCann ◽  
Warwick Grant ◽  
Stephen R. Doyle

We present a genome assembly and annotation of an individual female Cercopithifilaria johnstoni, a parasitic filarial nematode that is transmitted by hard ticks (Ixodidae) to infect a broad range of native Australian murid and marsupial hosts. The genome sequence is 76.9 Mbp in length, and although in draft form (N50 = 99 kbp, N50[n] = 232), is largely complete based on universally conserved orthologs (BUSCOs; genome = 94.9%, protein = 96.5%) and relative to other related filarial species. These data represent the first genomic resources for the genus Cercopithifilaria, a group of parasites with a broad host range, and form the basis for comparative analysis with the human-infective parasite, Onchocerca volvulus, both of which are responsible for similar eye and skin pathologies in their respective hosts.


2021 ◽  
Vol 6 ◽  
pp. 322
Author(s):  
Liam Crowley ◽  
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We present a genome assembly from an individual female Malachius bipustulatus (the common malachite beetle; Arthropoda; Insecta; Coleoptera; Melyridae). The genome sequence is 544 megabases in span. The majority (99.70%) of the assembly is scaffolded into 10 chromosomal pseudomolecules, with the X sex chromosome assembled.


2021 ◽  
Vol 6 ◽  
pp. 112
Author(s):  
Dan Mead ◽  
Rob Ogden ◽  
Anna Meredith ◽  
Gabriela Peniche ◽  
Michelle Smith ◽  
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We present a genome assembly from an individual female Aquila chrysaetos chrysaetos (the European golden eagle; Chordata; Aves; Accipitridae). The genome sequence is 1.23 gigabases in span. The majority of the assembly is scaffolded into 28 chromosomal pseudomolecules, including the W and Z sex chromosomes.


2021 ◽  
Vol 6 ◽  
pp. 326
Author(s):  
Douglas Boyes ◽  
Liam Crowley ◽  
Peter W.H. Holland ◽  
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We present a genome assembly from an individual female Acronicta aceris (the sycamore; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 466 megabases in span. The complete assembly is scaffolded into 32 chromosomal pseudomolecules, with the W and Z sex chromosome assembled.


2021 ◽  
Vol 6 ◽  
pp. 345
Author(s):  
Peter W.H. Holland ◽  
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We present a genome assembly from an individual female Noctua fimbriata (the broad-bordered yellow underwing; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 574 megabases in span. The complete assembly is scaffolded into 32 chromosomal pseudomolecules, with the W and Z sex chromosomes assembled.


2021 ◽  
Vol 6 ◽  
pp. 338
Author(s):  
Olga Sivell ◽  
Duncan Sivell ◽  
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We present a genome assembly from an individual female Coremacera marginata (Arthropoda; Insecta; Diptera; Sciomyzidae). The genome sequence is 980 megabases in span. The majority of the assembly (99.84%) is scaffolded into six chromosomal pseudomolecules, with the X sex chromosome assembled.


2021 ◽  
Vol 6 ◽  
pp. 304
Author(s):  
Alex Hayward ◽  
Roger Vila ◽  
Dominik R. Laetsch ◽  
Konrad Lohse ◽  
Tobias Baril ◽  
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We present a genome assembly from an individual female Melitaea athalia (also known as Mellicta athalia; the heath fritillary; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The genome sequence is 610 megabases in span. In total, 99.98% of the assembly is scaffolded into 32 chromosomal pseudomolecules, with the W and Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,824 protein coding genes.


2021 ◽  
Vol 6 ◽  
pp. 299
Author(s):  
Sophie Potter ◽  
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We present a genome assembly from an individual female Taurulus bubalis (the long-spined sea scorpion; Chordata; Actinopteri; Perciformes; Cottidae). The genome sequence is 615 megabases in span. The complete assembly is scaffolded into 21 chromosomal pseudomolecules.


2021 ◽  
Vol 6 ◽  
pp. 332
Author(s):  
Simona Secomandi ◽  
Fernando Spina ◽  
Giulio Formenti ◽  
Guido Roberto Gallo ◽  
Manuela Caprioli ◽  
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We present a genome assembly from an individual female Caprimulgus europaeus (the European nightjar; Chordata; Aves; Caprimulgiformes; Caprimulgidae). The genome sequence is 1,178 megabases in span. The majority of the assembly (99.33%) is scaffolded into 37 chromosomal pseudomolecules, including the W and Z sex chromosomes.


2021 ◽  
Vol 6 ◽  
pp. 307
Author(s):  
William Hawkes ◽  
Karl Wotton ◽  
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We present a genome assembly from an individual female Eristalis tenax (the drone fly; Arthropoda; Insecta; Diptera; Syriphidae). The genome sequence is 487 megabases in span. The majority of the assembly (96.50%) is scaffolded into six chromosomal pseudomolecules, with the X sex chromosome assembled.


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