Design and implementation of bi-level artificial bee colony algorithm to train hidden Markov models for performing multiple sequence alignment of proteins

Artificial Bee Colony ◽

Markov Models ◽

Hidden Markov ◽

Multiple Sequence ◽

Design And Implementation ◽

Multiple Sequence Alignment with Pro le Hidden Markov Models

10.31979/etd.vub9-j9hc ◽

2016 ◽

Author(s):

Shubhangi Rakhonde

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Multiple Sequence

MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information

Nucleic Acids Research ◽

10.1093/nar/gkl514 ◽

2006 ◽

Vol 34 (16) ◽

pp. 4364-4374 ◽

Cited By ~ 74

Author(s):

Jimin Pei ◽

Nick V. Grishin

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Structural Information ◽

Hidden Markov ◽

Multiple Sequence

Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2013.148 ◽

2014 ◽

Vol 11 (1) ◽

pp. 243-257 ◽

Cited By ~ 14

Author(s):

Jun Sun ◽

Vasile Palade ◽

Xiaojun Wu ◽

Wei Fang

Keyword(s):

Particle Swarm Optimization ◽

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Random Drift ◽

Multiple Sequence ◽

Swarm Optimization ◽

Drift Particle

2020 3rd International Conference on Computer Applications & Information Security (ICCAIS) ◽

Multiple Sequence Alignment using a Multiobjective Artificial Bee Colony Algorithm

10.1109/iccais48893.2020.9096734 ◽

2020 ◽

Author(s):

Najwa Altwaijry ◽

Malak Almasoud ◽

Areej Almalki ◽

Isra Al-Turaiki

Keyword(s):

Sequence Alignment ◽

Artificial Bee Colony ◽

Multiple Sequence ◽

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities

Bioinformatics ◽

10.1093/bioinformatics/btq338 ◽

2010 ◽

Vol 26 (16) ◽

pp. 1958-1964 ◽

Cited By ~ 162

Author(s):

Y. Liu ◽

B. Schmidt ◽

D. L. Maskell

Keyword(s):

Partition Function ◽

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Posterior Probabilities ◽

Multiple Sequence

2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA) ◽

Artificial bee colony algorithm for solving multiple sequence alignment

10.1109/bicta.2010.5645304 ◽

2010 ◽

Cited By ~ 3

Author(s):

Xiujuan Lei ◽

Jingjing Sun ◽

Xiaojun Xu ◽

Ling Guo

Keyword(s):

Sequence Alignment ◽

Artificial Bee Colony ◽

Multiple Sequence ◽

A new artificial bee colony algorithm to solve the multiple sequence alignment problem

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2016.075823 ◽

2016 ◽

Vol 14 (4) ◽

pp. 332 ◽

Cited By ~ 15

Author(s):

Celal Öztürk ◽

Selcuk Aslan

Keyword(s):

Sequence Alignment ◽

Artificial Bee Colony ◽

Multiple Sequence ◽

Bee Colony ◽

Alignment Problem

A Hybridization of Artificial Bee Colony with Swarming Approach of Bacterial Foraging Optimization for Multiple Sequence Alignment

Soft Computing for Biological Systems ◽

10.1007/978-981-10-7455-4_4 ◽

2018 ◽

pp. 39-65 ◽

Cited By ~ 1

Author(s):

R. Ranjani Rani ◽

D. Ramyachitra

Keyword(s):

Sequence Alignment ◽

Artificial Bee Colony ◽

Bacterial Foraging Optimization ◽

Multiple Sequence ◽

Bacterial Foraging ◽

Communications in Computer and Information Science - Recent Advances in Data Science ◽

A Novel Multiple Sequence Alignment Algorithm Based on Artificial Bee Colony and Particle Swarm Optimization

10.1007/978-981-15-8760-3_11 ◽

2020 ◽

pp. 152-169

Author(s):

Fangjun Kuang ◽

Siyang Zhang

Keyword(s):

Particle Swarm Optimization ◽

Sequence Alignment ◽

Artificial Bee Colony ◽

Particle Swarm ◽

Alignment Algorithm ◽

Multiple Sequence ◽

Swarm Optimization ◽

Bee Colony ◽

Sequence Alignment Algorithm

Hybrid multiobjective artificial bee colony for multiple sequence alignment

Applied Soft Computing ◽

10.1016/j.asoc.2015.12.034 ◽

2016 ◽

Vol 41 ◽

pp. 157-168 ◽

Cited By ~ 29

Author(s):

Álvaro Rubio-Largo ◽

Miguel A. Vega-Rodríguez ◽

David L. González-Álvarez

Keyword(s):

Sequence Alignment ◽

Artificial Bee Colony ◽

Multiple Sequence ◽