scholarly journals Hourly soil temperature prediction using integrated machine learning methods, GLUE uncertainty analysis, Taguchi search, and wavelet coherence analysis

Author(s):  
Akram Seifi ◽  
Mohammad Ehteram ◽  
Fatemeh Nayebloei ◽  
Fatemeh Soroush ◽  
Bahram Gharabaghi ◽  
...  

Abstract In this study, hourly Ts variations at 5, 10, and 30 cm soil depth were investigated and predicted for an arid site (Sirjan) and a semi-humid site (Sanandaj) in Iran. Standalone machine learning models (adaptive neuron fuzzy interface system (ANFIS), support vector machine model (SVM), radial basis function neural network (RBFNN), and multilayer perceptron (MLP)) were hybridized with four optimization algorithms (sunflower optimization (SFO), firefly algorithm (FFA), salp swarm algorithm (SSA), particle swarm optimization (PSO)) to improve prediction accuracy and reduce uncertainty. Uncertainty analysis was performed using generalized likelihood uncertainty estimation (GLUE), while wavelet coherence was used to assess interactions between Ts and meteorological parameters. For the arid site, ANFIS-SFO (RMSE = 1.18oC, MAE = 1.05oC, NSE = 0.93, PBIAS = 7%, and R2 = 0.9998) produced the most accurate performance at 5 cm soil depth. At best, hybridization with SFO (ANFIS-SFO, MLP-SFO, RBFNN-SFO, SVM-SFO) decreased RMSE by 5.6, 18, 18.3, and 18.18 % compared with the respective standalone model. At the semi-humid site, all integrated models showed most accurate performance at 10 cm soil depth, with RMSE for the best model (ANFIS-SFO) increasing by 10.5%, and MAE by 10.1%, from 10 to 30 cm depth. GLUE analysis confirmed that integrating optimization algorithms with machine learning models decreased the uncertainty in Ts predictions. Wavelet coherence analysis demonstrated that air temperature, relative humidity, and solar radiation, but not wind speed, had high coherence with Ts at different soil depths at both sites, and meteorological parameters mostly influenced Ts in upper soil layers.

2020 ◽  
Vol 2 (1) ◽  
pp. 3-6
Author(s):  
Eric Holloway

Imagination Sampling is the usage of a person as an oracle for generating or improving machine learning models. Previous work demonstrated a general system for using Imagination Sampling for obtaining multibox models. Here, the possibility of importing such models as the starting point for further automatic enhancement is explored.


2021 ◽  
Author(s):  
Norberto Sánchez-Cruz ◽  
Jose L. Medina-Franco

<p>Epigenetic targets are a significant focus for drug discovery research, as demonstrated by the eight approved epigenetic drugs for treatment of cancer and the increasing availability of chemogenomic data related to epigenetics. This data represents a large amount of structure-activity relationships that has not been exploited thus far for the development of predictive models to support medicinal chemistry efforts. Herein, we report the first large-scale study of 26318 compounds with a quantitative measure of biological activity for 55 protein targets with epigenetic activity. Through a systematic comparison of machine learning models trained on molecular fingerprints of different design, we built predictive models with high accuracy for the epigenetic target profiling of small molecules. The models were thoroughly validated showing mean precisions up to 0.952 for the epigenetic target prediction task. Our results indicate that the herein reported models have considerable potential to identify small molecules with epigenetic activity. Therefore, our results were implemented as freely accessible and easy-to-use web application.</p>


Sign in / Sign up

Export Citation Format

Share Document