1P137 Coarse-grained model of RNA-protein complexes based on all-atom simulations(Nucleic acid:Interaction & Complex formation,The 48th Annual Meeting of the Biophysical Society of Japan)

Naoto Hori; Wenfei Li; Shoji Takada

doi:10.2142/biophys.50.s43_4

1P137 Coarse-grained model of RNA-protein complexes based on all-atom simulations(Nucleic acid:Interaction & Complex formation,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s43_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S43

Author(s):

Naoto Hori ◽

Wenfei Li ◽

Shoji Takada

Keyword(s):

Complex Formation ◽

Annual Meeting ◽

Protein Complexes ◽

Coarse Grained ◽

Coarse Grained Model ◽

Biophysical Society ◽

Rna Protein Complexes

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1P-074 Sampling enhancement for all-atom simulation using coarse-grained model(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s32_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S32

Author(s):

Hiromitsu Shimoyama ◽

Yasushige Yonezawa ◽

Haruki Nakamura

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Coarse Grained Model ◽

Biophysical Society

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2M1648 Free energy landscape analysis of the movement of myosin VI along actin filament using a coarse-grained model(Molecular motor 3,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s99_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S99

Author(s):

Masahito Ikeo ◽

Masaki Sasai ◽

Takeshi Sasaki ◽

Tomoki Terada

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Actin Filament ◽

Molecular Motor ◽

Energy Landscape ◽

Landscape Analysis ◽

Coarse Grained ◽

Free Energy Landscape ◽

Coarse Grained Model ◽

Biophysical Society

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2A1636 Simplified coarse-grained model of cellular membranes to simulate dynamic features of cells(Biol & Artifi memb 2: Structure & Property, Dynamics, Signal transduction,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s75_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S75

Author(s):

Keitaro Kato ◽

Junichi Tashiro ◽

Sigenori Miyawaki ◽

Kouhei Ebe ◽

Makio Tokunaga

Keyword(s):

Signal Transduction ◽

Annual Meeting ◽

Coarse Grained ◽

Structure Property ◽

Cellular Membranes ◽

Dynamic Features ◽

Coarse Grained Model ◽

Biophysical Society

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1P136 Coarse-grained simulation of protein-DNA complex : mechanical unzipping of nucleosome(Nucleic acid:Interaction & Complex formation,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s43_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S43

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Complex Formation ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

Dna Complex

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1PT178 Folding of topologically complex proteins by an atomic interaction based coarse grained model(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s99_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S99

Author(s):

Wenfei Li ◽

Tsuyoshi Terakawa ◽

Wei Wang ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Atomic Interaction ◽

Coarse Grained Model ◽

Biophysical Society

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2P307 Simplified coarse-grained model of cellular membranes to simulate dynamic features of cells(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s136_6 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S136-S137

Author(s):

keitaro kato ◽

Junichi Tashiro ◽

Shigenori Miyawaki ◽

Kouhei Ebe ◽

Makio Tokunaga

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Cellular Membranes ◽

Dynamic Features ◽

Coarse Grained Model ◽

Biophysical Society

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1P-098 Replica exchange simulations applied for coarse-grained models of giant protein-nucleic acid complex(Nucleic acid:Interaction & Complex formation, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s79_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S79

Author(s):

Naoto Hori ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Coarse Grained ◽

Replica Exchange ◽

Acid Complex ◽

Biophysical Society ◽

Protein Nucleic Acid

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2P126 Three dimensional structure prediction of RNA-protein complexes by MD simulation(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s215_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S215

Author(s):

Kei Yura ◽

Junichi Iwakiri ◽

Michiaki Hamada ◽

Kiyoshi Asai ◽

Tomoshi Kameda

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Structure Prediction ◽

Md Simulation ◽

Protein Complexes ◽

Three Dimensional ◽

Dimensional Structure ◽

Acid Interaction ◽

Biophysical Society ◽

Rna Protein Complexes

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1A1412 Phase Transition Behavior of Lipid Bilayer Studied by REMD with a Coarse-Grained Model(Biol & Artifi memb 1: Structure & Property, Dynamics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s27_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S27

Author(s):

Tetsuro Nagai ◽

Yuko Okamoto

Keyword(s):

Phase Transition ◽

Annual Meeting ◽

Lipid Bilayer ◽

Coarse Grained ◽

Structure Property ◽

Phase Transition Behavior ◽

Coarse Grained Model ◽

Transition Behavior ◽

Biophysical Society

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1P235 1I1325 Phase behavior of DPPC bilayer studied by REMD with coarse-grained model(Biol & Artifi memb.:Structure & Property,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s61_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S61

Author(s):

Tetsuro Nagai ◽

Yuko Okamoto

Keyword(s):

Phase Behavior ◽

Annual Meeting ◽

Coarse Grained ◽

Structure Property ◽

Coarse Grained Model ◽

Dppc Bilayer ◽

Biophysical Society ◽

Oral Presentations

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