3PT224 First principles molecular simulation with a generalized-ensemble algorithm for studying chemical reactions of biomolecular systems(The 50th Annual Meeting of the Biophysical Society of Japan)

Yoshiharu Mori; Yuko Okamoto

doi:10.2142/biophys.52.s179_2

3PT224 First principles molecular simulation with a generalized-ensemble algorithm for studying chemical reactions of biomolecular systems(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s179_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S179

Author(s):

Yoshiharu Mori ◽

Yuko Okamoto

Keyword(s):

Annual Meeting ◽

Molecular Simulation ◽

Chemical Reactions ◽

First Principles ◽

Biomolecular Systems ◽

Biophysical Society ◽

Ensemble Algorithm

Download Full-text

1SBA-03 "Soft" structure-function relationship revealed by functional conversion of photoreceptive proteins(1SBA Regulating structure formation and function of biomolecular systems with softness,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s116_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S116

Author(s):

Hideki Kandori

Keyword(s):

Structure Function ◽

Structure Formation ◽

Annual Meeting ◽

Biomolecular Systems ◽

Biophysical Society ◽

Structure Function Relationship ◽

Function Relationship ◽

And Function

Download Full-text

1P127 Zero-dipole summation method for evaluating electrostatic interaction in molecular simulation of biomolecular system(06.Electronic state,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s126_6 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S126

Author(s):

Ikuo Fukuda ◽

Narutoshi Kamiya ◽

Haruki Nakamura

Keyword(s):

Annual Meeting ◽

Electronic State ◽

Molecular Simulation ◽

Electrostatic Interaction ◽

Summation Method ◽

Biophysical Society ◽

Biomolecular System

Download Full-text

1P119 How transcription factor can bypass obstacles? : Molecular simulation approaches(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s160_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S160

Author(s):

Mami Saito ◽

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Transcription Factor ◽

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Binding Proteins ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

Download Full-text

3P034 First-principles Studies of Relationship between Proton Behaviour and Physiological Environments in Proteins(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s151_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S151

Author(s):

Katsumasa Kamiya ◽

Yasuteru Shigeta

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

First Principles ◽

Biophysical Society

Download Full-text

3P033 Molecular simulation study on the mechanism of substrate uptake in cellulase TrCel7A(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s254_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S254

Author(s):

Takashi Kanazawa ◽

Minoru Sakurai ◽

Tadaomi Furuta

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Molecular Simulation ◽

Simulation Study ◽

Substrate Uptake ◽

Biophysical Society

Download Full-text

2P-110 Coarse-grained molecular simulation of protein-DNA complex(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s92_3 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S92

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Dna Complex

Download Full-text

2P-039 Induce-fit: revisited by time-dependent and -independent linear response functions applied on perturbed biomolecular systems(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s81_2 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S81

Author(s):

Lee-Wei Yang ◽

Akio Kitao ◽

Nobuhiro Go

Keyword(s):

Annual Meeting ◽

Linear Response ◽

Time Dependent ◽

Response Functions ◽

Biomolecular Systems ◽

Biophysical Society

Download Full-text

1SH1105 Molecular Simulation Study of Neutron Scattering from Protein Dynamics(1SH A New Break of Dawn of "Neutrons in Biology"-New Prospects of Neutron Biophysics with J-PARC-,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s5_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S5

Author(s):

Yasumasa Joti

Keyword(s):

Neutron Scattering ◽

Protein Dynamics ◽

Annual Meeting ◽

Molecular Simulation ◽

Simulation Study ◽

Biophysical Society

Download Full-text

1SBA-05 Time-resolved Observation of Functionally-important Molecular Flexibility of Proteins(1SBA Regulating structure formation and function of biomolecular systems with softness,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s116_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S116

Author(s):

Yasuhisa Mizutani

Keyword(s):

Structure Formation ◽

Annual Meeting ◽

Molecular Flexibility ◽

Biomolecular Systems ◽

Time Resolved ◽

Biophysical Society ◽

And Function

Download Full-text

2P120 Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s214_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S214

Author(s):

Yusuke Takagi ◽

Yuichi Kokabu ◽

Takashi Oda ◽

Hiroaki Tachiwana ◽

Hiroo Kenzaki ◽

...

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Structural Dynamics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

Download Full-text