scholarly journals Reaction-Diffusion Systems: Self-Balancing Diffusion and the Use of the Extent of Reaction as a Descriptor of Reaction Kinetics

Author(s):  
Miloslav Pekař

Self-balancing diffusion is a concept which restricts the introduction of extents of reactions. This concept is analyzed in detail for mass- and molar-based balances of reaction-diffusion mixtures, in relation to non-self-balancing cases, and with respect to its practical consequences. A note on a recent generalization of the concept of reaction and diffusion extents is also included.<br>

2019 ◽  
Author(s):  
Miloslav Pekař

Self-balancing diffusion is a concept which restricts the introduction of extents of reactions. This concept is analyzed in detail for mass- and molar-based balances of reaction-diffusion mixtures, in relation to non-self-balancing cases, and with respect to its practical consequences. A note on a recent generalization of the concept of reaction and diffusion extents is also included.<br>


Author(s):  
Alan Turing

It is suggested that a system of chemical substances, called morphogens, reacting together and diffusing through a tissue, is adequate to account for the main phenomena of morphogenesis. Such a system, although it may originally be quite homogenous, may later develop a pattern or structure due to an instability of the homogeneous equilibrium, which is triggered off by random disturbances. Such reaction-diffusion systems are considered in some detail in the case of an isolated ring of cells, a mathematically convenient, though biologically unusual system. The investigation is chiefly concerned with the onset of instability. It is found that there are six essentially different forms which this may take. In the most interesting form stationary waves appear on the ring. It is suggested that this might account, for instance, for the tentacle patterns on Hydra and for whorled leaves. A system of reactions and diffusion on a sphere is also considered. Such a system appears to account for gastrulation. Another reaction system in two dimensions gives rise to patterns reminiscent of dappling. It is also suggested that stationary waves in two dimensions could account for the phenomena of phyllotaxis. The purpose of this paper is to discuss a possible mechanism by which the genes of a zygote may determine the anatomical structure of the resulting organism. The theory does not make any new hypotheses; it merely suggests that certain well-known physical laws are sufficient to account for many of the facts. The full understanding of the paper requires a good knowledge of mathematics, some biology, and some elementary chemistry. Since readers cannot be expected to be experts in all of these subjects, a number of elementary facts are explained, which can be found in text-books, but whose omission would make the paper difficult reading. In this section a mathematical model of the growing embryo will be described. This model will be a simplification and an idealization, and consequently a falsification. It is to be hoped that the features retained for discussion are those of greatest importance in the present state of knowledge. The model takes two slightly different forms. In one of them the cell theory is recognized but the cells are idealized into geometrical points.


It is suggested that a system of chemical substances, called morphogens, reacting together and diffusing through a tissue, is adequate to account for the main phenomena of morphogenesis. Such a system, although it may originally be quite homogeneous, may later develop a pattern or structure due to an instability of the homogeneous equilibrium, which is triggered off by random disturbances. Such reaction-diffusion systems are considered in some detail in the case of an isolated ring of cells, a mathematically convenient, though biologically unusual system. The investigation is chiefly concerned with the onset of instability. It is found that there are six essentially different forms which this may take. In the most interesting form stationary waves appear on the ring. It is suggested that this might account, for instance, for the tentacle patterns on Hydra and for whorled leaves. A system of reactions and diffusion on a sphere is also considered. Such a system appears to account for gastrulation. Another reaction system in two dimensions gives rise to patterns reminiscent of dappling. It is also suggested that stationary waves in two dimensions could account for the phenomena of phyllotaxis. The purpose of this paper is to discuss a possible mechanism by which the genes of a zygote may determine the anatomical structure of the resulting organism. The theory does not make any new hypotheses; it merely suggests that certain well-known physical laws are sufficient to account for many of the facts. The full understanding of the paper requires a good knowledge of mathematics, some biology, and some elementary chemistry. Since readers cannot be expected to be experts in all of these subjects, a number of elementary facts are explained, which can be found in text-books, but whose omission would make the paper difficult reading.


2001 ◽  
Vol 6 (4) ◽  
pp. 231-246
Author(s):  
A. I. Lebanov ◽  
A. P. Chernyaev ◽  
T. K. Starozhilova

A new mechanism of pattern formation different from the Turing and oscillatory instabilities in the reaction–diffusion systems was found. It is closely connected with the resonance phenomenon that appears in the models when Jacobi's matrix of the kinetic part is equivalent to Jordan cell and diffusion coefficients are cited. Some results of numerical calculations of the blood coagulation model are discussed. The pattern formation regimes that can be treated as the results from the resonance phenomenon were observed.


2021 ◽  
Vol 83 (5) ◽  
Author(s):  
Thomas E. Woolley ◽  
Andrew L. Krause ◽  
Eamonn A. Gaffney

AbstractReaction–diffusion systems are an intensively studied form of partial differential equation, frequently used to produce spatially heterogeneous patterned states from homogeneous symmetry breaking via the Turing instability. Although there are many prototypical “Turing systems” available, determining their parameters, functional forms, and general appropriateness for a given application is often difficult. Here, we consider the reverse problem. Namely, suppose we know the parameter region associated with the reaction kinetics in which patterning is required—we present a constructive framework for identifying systems that will exhibit the Turing instability within this region, whilst in addition often allowing selection of desired patterning features, such as spots, or stripes. In particular, we show how to build a system of two populations governed by polynomial morphogen kinetics such that the: patterning parameter domain (in any spatial dimension), morphogen phases (in any spatial dimension), and even type of resulting pattern (in up to two spatial dimensions) can all be determined. Finally, by employing spatial and temporal heterogeneity, we demonstrate that mixed mode patterns (spots, stripes, and complex prepatterns) are also possible, allowing one to build arbitrarily complicated patterning landscapes. Such a framework can be employed pedagogically, or in a variety of contemporary applications in designing synthetic chemical and biological patterning systems. We also discuss the implications that this freedom of design has on using reaction–diffusion systems in biological modelling and suggest that stronger constraints are needed when linking theory and experiment, as many simple patterns can be easily generated given freedom to choose reaction kinetics.


Sign in / Sign up

Export Citation Format

Share Document