Faculty Opinions recommendation of Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana.

2008 ◽  
Author(s):  
Alisdair Fernie
Keyword(s):  
Arabidopsis Thaliana ◽  
Mrna Decay ◽  
Decay Rates ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of mRNA Decay Rates and Their Determinants in Arabidopsis thaliana

2007 ◽  
Vol 19 (11) ◽  
pp. 3418-3436 ◽  
Author(s):  
Reena Narsai ◽  
Katharine A. Howell ◽  
A. Harvey Millar ◽  
Nicholas O'Toole ◽  
Ian Small ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Mrna Decay ◽  
Decay Rates ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana

2016 ◽  
Vol 4 (4) ◽  
pp. 279 ◽  
Author(s):  
Shaiq Sultan ◽  
Muhammad Amjid Ali ◽  
Rana Muhammad Atif ◽  
Farrukh Azeem ◽  
Habibullah Nadeem ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factors ◽  
Chromosomal Localization ◽  
Evolutionary Relationship ◽  
Wrky Transcription Factors ◽  
Specific Sequence ◽  
Multiple Sequence ◽  
Genome Wide Analysis ◽  
Functional Homology ◽  
Genome Wide

WRKY transcription factors are a class of DNA-binding proteins that bind with a specific sequence C/TTGACT/C known as W-Box found in promoters of genes which are regulated by these WRKYs. From previous studies, 43 different stress responsive WRKY transcription factors in Arabidopsis thaliana, identified and then categorized in three groups viz., abiotic, biotic and both of these stresses. A comprehensive genome wide analysis including chromosomal localization, gene structure analysis, multiple sequence alignment, phylogenetic analysis and promoter analysis of these WRKY genes was carried out in this study to determine the functional homology in Arabidopsis. This analysis led to the classification of these WRKY family members into 3 major groups and subgroups and showed evolutionary relationship among these groups on the base of their functional WRKY domain, chromosomal localization and intron/exon structure. The proposed groups of these stress responsive WRKY genes and annotation based on their position on chromosomes can also be explored to determine their functional homology in other plant species in relation to different stresses. The result of the present study provides indispensable genomic information for the stress responsive WRKY transcription factors in Arabidopsis and will pave the way to explain the precise role of various AtWRKYs in plant growth and development under stressed conditions.

scholarly journals Genome-wide analysis of mRNA decay patterns during early Drosophila development

2010 ◽  
Vol 11 (9) ◽  
pp. R93 ◽  
Author(s):  
Stefan Thomsen ◽  
Simon Anders ◽  
Sarath Chandra Janga ◽  
Wolfgang Huber ◽  
Claudio R Alonso
Keyword(s):  
Mrna Decay ◽  
Drosophila Development ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

2012 ◽  
Vol 22 (7) ◽  
pp. 1306-1315 ◽  
Author(s):  
E. J. Belfield ◽  
X. Gan ◽  
A. Mithani ◽  
C. Brown ◽  
C. Jiang ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Fast Neutron ◽  
Neutron Irradiation ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Fast Neutron Irradiation

scholarly journals Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

2012 ◽  
Vol 109 (14) ◽  
pp. 5370-5375 ◽  
Author(s):  
H. Stroud ◽  
S. Otero ◽  
B. Desvoyes ◽  
E. Ramirez-Parra ◽  
S. E. Jacobsen ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis of long non-coding RNAs responsive to multiple nutrient stresses in Arabidopsis thaliana

2020 ◽  
Author(s):  
Jingjing Wang ◽  
Qi Chen ◽  
Wenyi Wu ◽  
Yujie Chen ◽  
Yincong Zhou ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Non Coding Rnas
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