Faculty Opinions recommendation of Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b.

Author(s):  
Tom Owen-Hughes ◽  
Daniel Ryan
Keyword(s):  
2006 ◽  
Vol 26 (21) ◽  
pp. 7871-7879 ◽  
Author(s):  
David G. E. Martin ◽  
Kristin Baetz ◽  
Xiaobing Shi ◽  
Kay L. Walter ◽  
Vicki E. MacDonald ◽  
...  

ABSTRACT The ING (inhibitor of growth) protein family includes a group of homologous nuclear proteins that share a highly conserved plant homeodomain (PHD) finger domain at their carboxyl termini. Members of this family are found in multiprotein complexes that posttranslationally modify histones, suggesting that these proteins serve a general role in permitting various enzymatic activities to interact with nucleosomes. There are three members of the ING family in Saccharomyces cerevisiae: Yng1p, Yng2p, and Pho23p. Yng1p is a component of the NuA3 histone acetyltransferase complex and is required for the interaction of NuA3 with chromatin. To gain insight into the function of the ING proteins, we made use of a genetic strategy to identify genes required for the binding of Yng1p to histones. Using the toxicity of YNG1 overexpression as a tool, we showed that Yng1p interacts with the amino-terminal tail of histone H3 and that this interaction can be disrupted by loss of lysine 4 methylation within this tail. Additionally, we mapped the region of Yng1p required for overexpression of toxicity to the PHD finger, showed that this region capable of binding lysine 4-methylated histone H3 in vitro, and demonstrated that mutations of the PHD finger that abolish binding in vitro are no longer toxic in vivo. These results identify a novel function for the Yng1p PHD finger in promoting stabilization of the NuA3 complex at chromatin through recognition of histone H3 lysine 4 methylation.


2014 ◽  
Vol 459 (3) ◽  
pp. 505-512 ◽  
Author(s):  
Hillary F. Allen ◽  
Kevin D. Daze ◽  
Takashi Shimbo ◽  
Anne Lai ◽  
Catherine A. Musselman ◽  
...  

We report a new set of calixarene-based host compounds and show their applicability in characterizing functions of methyllysine-recognizing epigenetic readers. Calixarenes disrupt the association of the PHD finger of CHD4 with a trimethylated, but not an unmodified, histone tail.


2014 ◽  
Vol 9 (12) ◽  
pp. 2864-2874 ◽  
Author(s):  
Thomas C. R. Miller ◽  
Trevor J. Rutherford ◽  
Kristian Birchall ◽  
Jasveen Chugh ◽  
Marc Fiedler ◽  
...  

Nature ◽  
2010 ◽  
Vol 466 (7303) ◽  
pp. 258-262 ◽  
Author(s):  
Lei Zeng ◽  
Qiang Zhang ◽  
SiDe Li ◽  
Alexander N. Plotnikov ◽  
Martin J. Walsh ◽  
...  
Keyword(s):  

Author(s):  
Shane M. Ginnard ◽  
Alyssa E. Winkler ◽  
Carlos Mellado Fritz ◽  
Tatum Bluhm ◽  
Ray Kemmer ◽  
...  

1999 ◽  
Vol 19 (12) ◽  
pp. 8461-8468 ◽  
Author(s):  
Yukio Mukai ◽  
Eri Matsuo ◽  
Sharon Y. Roth ◽  
Satoshi Harashima

ABSTRACT The Ssn6p-Tup1p corepressor complex is important to the regulation of several diverse genes in Saccharomyces cerevisiae and serves as a model for corepressor functions. To investigate the evolutionary conservation of these functions, sequences homologous to the S. cerevisiae TUP1 gene were cloned fromKluyveromyces lactis (TUP1) andSchizosaccharomyces pombe (tup11 +). Interestingly, while the K. lactis TUP1 gene complemented an S. cerevisiae tup1 null mutation, the S. pombe tup11 + gene did not, even when expressed under the control of the S. cerevisiae TUP1 promoter. However, anS. pombe Tup11p-LexA fusion protein repressed transcription of a corresponding reporter gene, indicating that this Tup1p homolog has intrinsic repressor activity. Moreover, a chimeric protein containing the amino-terminal Ssn6p-binding domain of S. cerevisiae Tup1p and 544 amino acids from the C-terminal region of S. pombe Tup11p complemented the S. cerevisiae tup1 mutation. The failure of native S. pombe Tup11p to complement loss of Tup1p functions in S. cerevisiaecorresponds to an inability to bind to S. cerevisiae Ssn6p in vitro. Disruption of tup11 + in combination with a disruption of tup12 +, anotherTUP1 homolog gene in S. pombe, causes a defect in glucose repression of fbp1 +, suggesting thatS. pombe Tup1p homologs function as repressors in S. pombe. Furthermore, Tup11p binds specifically to histones H3 and H4 in vitro, indicating that both the repression and histone binding functions of Tup1p-related proteins are conserved across species.


2017 ◽  
Vol 292 (43) ◽  
pp. 17643-17657 ◽  
Author(s):  
Sebastian Kostrhon ◽  
Georg Kontaxis ◽  
Tanja Kaufmann ◽  
Erika Schirghuber ◽  
Stefan Kubicek ◽  
...  

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