Faculty Opinions recommendation of ECOD: an evolutionary classification of protein domains.

2016 ◽  
Author(s):  
Andreas Prlić
Keyword(s):  
Protein Domains

scholarly journals TEsorter: lineage-level classification of transposable elements using conserved protein domains

2019 ◽  
Author(s):  
Ren-Gang Zhang ◽  
Zhao-Xuan Wang ◽  
Shujun Ou ◽  
Guang-Yuan Li
Keyword(s):  
Transposable Elements ◽  
Phylogenetic Relationships ◽  
Protein Domains ◽  
Ltr Retrotransposons ◽  
Link Type ◽  
Eukaryotic Genomes

AbstractSummaryTransposable elements (TEs) constitute an import part in eukaryotic genomes, but their classification, especially in the lineage or clade level, is still challenging. For this purpose, we propose TEsorter, which is based on conserved protein domains of TEs. It is easy-to-use, fast with multiprocessing, sensitive and precise to classify TEs especially LTR retrotransposons (LTR-RTs). Its results can also directly reflect phylogenetic relationships and diversities of the classified LTR-RTs.AvailabilityThe code in Python is freely available at https://github.com/zhangrengang/TEsorter.

The Classification of Protein Domains

2008 ◽  
pp. 123-146 ◽  
Author(s):  
Russell L. Marsden ◽  
Christine A. Orengo
Keyword(s):  
Protein Domains

Structural Classification of Small, Disulfide-rich Protein Domains

2006 ◽  
Vol 359 (1) ◽  
pp. 215-237 ◽  
Author(s):  
Sara Cheek ◽  
S. Sri Krishna ◽  
Nick V. Grishin
Keyword(s):  
Protein Domains ◽  
Structural Classification

The Classification of Protein Domains

2016 ◽  
pp. 137-164 ◽  
Author(s):  
Natalie Dawson ◽  
Ian Sillitoe ◽  
Russell L. Marsden ◽  
Christine A. Orengo
Keyword(s):  
Protein Domains

scholarly journals The history of the CATH structural classification of protein domains

Biochimie ◽  
2015 ◽  
Vol 119 ◽  
pp. 209-217 ◽  
Author(s):  
Ian Sillitoe ◽  
Natalie Dawson ◽  
Janet Thornton ◽  
Christine Orengo
Keyword(s):  
Protein Domains ◽  
Structural Classification ◽  
History Of

scholarly journals Classification of protein domains based on their three-dimensional shapes (CPD3DS)

2021 ◽  
Vol 6 (3) ◽  
pp. 224-230
Author(s):  
Zhaochang Yang ◽  
Mingkang Liu ◽  
Bin Wang ◽  
Beibei Wang
Keyword(s):  
Three Dimensional ◽  
Protein Domains
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