Phylogenetic relationship and species delimitation of matsutake and allied species based on multilocus phylogeny and haplotype analyses

Mycologia ◽  
2012 ◽  
Vol 104 (6) ◽  
pp. 1369-1380 ◽  
Author(s):  
Yuko Ota ◽  
Takashi Yamanaka ◽  
Hitoshi Murata ◽  
Hitoshi Neda ◽  
Akira Ohta ◽  
...  
2021 ◽  
Vol 11 ◽  
Author(s):  
Jinyuan Chen ◽  
Guili Wu ◽  
Nawal Shrestha ◽  
Shuang Wu ◽  
Wei Guo ◽  
...  

Medicago and its relatives, Trigonella and Melilotus comprise the most important forage resources globally. The alfalfa selected from the wild relatives has been cultivated worldwide as the forage queen. In the Flora of China, 15 Medicago, eight Trigonella, and four Melilotus species are recorded, of which six Medicago and two Trigonella species are introduced. Although several studies have been conducted to investigate the phylogenetic relationship within the three genera, many Chinese naturally distributed or endemic species are not included in those studies. Therefore, the taxonomic identity and phylogenetic relationship of these species remains unclear. In this study, we collected samples representing 18 out of 19 Chinese naturally distributed species of these three genera and three introduced Medicago species, and applied an integrative approach by combining evidences from population-based morphological clusters and molecular data to investigate species boundaries. A total of 186 individuals selected from 156 populations and 454 individuals from 124 populations were collected for genetic and morphological analyses, respectively. We sequenced three commonly used DNA barcodes (trnH-psbA, trnK-matK, and ITS) and one nuclear marker (GA3ox1) for phylogenetic analyses. We found that 16 out of 21 species could be well delimited based on phylogenetic analyses and morphological clusters. Two Trigonella species may be merged as one species or treated as two subspecies, and Medicago falcata should be treated as a subspecies of the M. sativa complex. We further found that major incongruences between the chloroplast and nuclear trees mainly occurred among the deep diverging lineages, which may be resulted from hybridization, incomplete lineage sorting and/or sampling errors. Further studies involving a finer sampling of species associated with large scale genomic data should be employed to better understand the species delimitation of these three genera.


2018 ◽  
Vol 125 ◽  
pp. 177-187 ◽  
Author(s):  
Panayiota Kotsakiozi ◽  
Daniel Jablonski ◽  
Çetin Ilgaz ◽  
Yusuf Kumlutaş ◽  
Aziz Avcı ◽  
...  

2018 ◽  
Vol 47 (6) ◽  
pp. 655-672
Author(s):  
Lin Zhang ◽  
Keping Sun ◽  
Tong Liu ◽  
Hanbo Zhao ◽  
Gábor Csorba ◽  
...  

Zootaxa ◽  
2020 ◽  
Vol 4747 (2) ◽  
pp. 302-326
Author(s):  
AURÉLIEN MIRALLES ◽  
PHILIPPE GENIEZ ◽  
MENAD BEDDEK ◽  
DANIEL MENDEZ ARANDA ◽  
JOSÉ CARLOS BRITO ◽  
...  

We generated an extensive morphological and multilocus molecular dataset to investigate the taxonomy of Acanthodactylus erythrurus, a widespread species across the Mediterranean and semiarid habitats of the Iberian Peninsula and the Maghreb. Our integrated analyses revealed the existence of at least five basal lineages: (i) an Ibero-Moroccan clade widespread across Morocco and the Iberian Peninsula, from sea-level up to a maximal known altitude of 1,930 m, (ii) an Algero-Tunisian clade, distributed in coastal and inland areas of eastern Algeria and Tunisia, (iii) a Central Algerian clade, formed by two inland populations located in central Algeria (1,000–1,500 m a.s.l.), (iv) a western High Atlas clade including two montane populations from Jbel Siroua and Tizi n’Tichka (at 2,320 m and 2,176 m a.s.l., respectively) and (v) an eastern High Atlas clade, including at least two montane populations from Isli and Tislit (both localities around 2,275 m a.s.l.). An integrated species delimitation approach combining molecular and multivariate morphological analyses demonstrated complete reproductive isolation and hence speciation between the Ibero-Moroccan clade and the eastern High Atlas clade in their contact zone. The divergence between all five clades is broadly similar, supporting the existence of at least five species in the Acanthodactylus erythrurus complex. In the present work we describe the two well-differentiated endemic species from the Moroccan Atlas for which no name is available: Acanthodactylus lacrymae sp. nov. from Isli and Tislit and A. montanus sp. nov. from Jbel Siroua and Tizi n’Tichka. Further work will be needed to fully resolve the taxonomy of this species complex. 


2017 ◽  
Vol 106 ◽  
pp. 6-17 ◽  
Author(s):  
Nikolaos Psonis ◽  
Aglaia Antoniou ◽  
Oleg Kukushkin ◽  
Daniel Jablonski ◽  
Boyan Petrov ◽  
...  

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