Tropical deforestation often produces landscapes characterized by isolated patches of forest habitat surrounded by pasture, agriculture, or regrowth vegetation. Both the size and the distribution of these forest patches may influence the long-term persistence of faunal species. There is, therefore, a pressing need to understand faunal responses to patterns of forest fragmentation in tropical systems. The Biological Dynamics of Forest Fragments Project (BDFFP) provides a wealth of autecological information and spatially explicit data describing habitat use and movement of fauna between Amazonian forest fragments. Using data from the BDFFP and other studies in the Amazon Basin, this paper reviews the information available on tropical insects, frogs, birds, primates, and other mammals that can be used to identify and classify species most at risk for extirpation in fragmented forests.Key words: Amazonia, habitat fragmentation, rainforest, fauna, Biological Dynamics of Forest Fragmentation Project.