scholarly journals libPLS: An Integrated Library for Partial Least Squares Regression and Discriminant Analysis

Author(s):  
Hongdong Li ◽  
Qingsong Xu ◽  
Yizeng Liang

Partial least squares (PLS) have gained wide applications especially in chemometrics, metabolomics/metabonomics as well as bioinformatics. To our knowledge, an integrated PLS library that include not only basic PLS modeling algorithms but also advanced and/or recently developed methods on model assessment, outlier detection and variable selection is in lack. Here we present libPLS which provides an integrated platform for developing PLS regression and/or discriminant analysis (PLS-DA) models. This library is written in MATLAB and freely available at www.libpls.net.

Author(s):  
Hongdong Li ◽  
Qingsong Xu ◽  
Yizeng Liang

Partial least squares (PLS) have gained wide applications especially in chemometrics, metabolomics/metabonomics as well as bioinformatics. To our knowledge, an integrated PLS library that include not only basic PLS modeling algorithms but also advanced and/or recently developed methods on model assessment, outlier detection and variable selection is in lack. Here we present libPLS which provides an integrated platform for developing PLS regression and/or discriminant analysis (PLS-DA) models. This library is written in MATLAB and freely available at www.libpls.net.


Metabolites ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 278 ◽  
Author(s):  
Marta Bevilacqua ◽  
Rasmus Bro

In this paper, we discuss the validity of using score plots of component models such as partial least squares regression, especially when these models are used for building classification models, and models derived from partial least squares regression for discriminant analysis (PLS-DA). Using examples and simulations, it is shown that the currently accepted practice of showing score plots from calibration models may give misleading interpretations. It is suggested and shown that the problem can be solved by replacing the currently used calibrated score plots with cross-validated score plots.


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