scholarly journals Author response: Structural dynamics of E. coli single-stranded DNA binding protein reveal DNA wrapping and unwrapping pathways

2015 ◽  
Author(s):  
Sukrit Suksombat ◽  
Rustem Khafizov ◽  
Alexander G Kozlov ◽  
Timothy M Lohman ◽  
Yann R Chemla
2018 ◽  
Vol 46 (21) ◽  
pp. 11287-11302 ◽  
Author(s):  
Parminder Kaur ◽  
Matthew J Longley ◽  
Hai Pan ◽  
Hong Wang ◽  
William C Copeland

2002 ◽  
Vol 76 (19) ◽  
pp. 9695-9701 ◽  
Author(s):  
Jannick Dyrløv Bendtsen ◽  
Anders S. Nilsson ◽  
Hansjörg Lehnherr

ABSTRACT Bacteriophage P1 encodes a single-stranded DNA-binding protein (SSB-P1), which shows 66% amino acid sequence identity to the SSB protein of the host bacterium Escherichia coli. A phylogenetic analysis indicated that the P1 ssb gene coexists with its E. coli counterpart as an independent unit and does not represent a recent acquirement of the phage. The P1 and E. coli SSB proteins are fully functionally interchangeable. SSB-P1 is nonessential for phage growth in an exponentially growing E. coli host, and it is sufficient to promote bacterial growth in the absence of the E. coli SSB protein. Expression studies showed that the P1 ssb gene is transcribed only, in an rpoS-independent fashion, during stationary-phase growth in E. coli. Mixed infection experiments demonstrated that a wild-type phage has a selective advantage over an ssb-null mutant when exposed to a bacterial host in the stationary phase. These results reconciled the observed evolutionary conservation with the seemingly redundant presence of ssb genes in many bacteriophages and conjugative plasmids.


1980 ◽  
Vol 210 (1180) ◽  
pp. 337-349 ◽  

The gene A protein of bacteriophage ɸX 174 initiates replication of super-twisted RFI DNA by cleaving the viral (+) strand at the origin of replication and binding to the 5' end. Upon addition of E. coli rep protein (single-stranded DNA dependent ATPase), E. coli single-stranded DNA binding protein and ATP, complete unwinding of the two strands occurs. Electron microscopic analyses of intermediates in the reaction reveal that the unwinding occurs by movement of the 5' end into the duplex, displacing the viral strand in the form of a single-stranded loop. Since unwinding will not occur in the absence of either gene A protein or rep protein, it is presumed that the rep protein interacts to form a complex with the bound gene A protein. Single-stranded DNA binding protein facilitates the unwinding by binding to the exposed single-stranded DNA. Further addition of the four deoxyribotriphosphates and DNA polymerase III holoenzyme to the reaction results in synthesis of viral (+) single-stranded circles in amounts exceeding that of the input template. A model describing the role of gene A protein and rep protein in duplex DNA replication is presented and other properties of gene A protein discussed.


2015 ◽  
Vol 108 (2) ◽  
pp. 389a
Author(s):  
Alexander G. Kozlov ◽  
Elizabeth Weiland ◽  
Anuradha Mittal ◽  
Vince Waldman ◽  
Rohit V. Pappu ◽  
...  

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