Probe interval graphs and probe unit interval graphs on superclasses of cographs

Graph Theory International audience A graph is probe (unit) interval if its vertices can be partitioned into two sets: a set of probe vertices and a set of nonprobe vertices, so that the set of nonprobe vertices is a stable set and it is possible to obtain a (unit) interval graph by adding edges with both endpoints in the set of nonprobe vertices. Probe (unit) interval graphs form a superclass of (unit) interval graphs. Probe interval graphs were introduced by Zhang for an application concerning the physical mapping of DNA in the human genome project. The main results of this article are minimal forbidden induced subgraphs characterizations of probe interval and probe unit interval graphs within two superclasses of cographs: P4-tidy graphs and tree-cographs. Furthermore, we introduce the concept of graphs class with a companion which allows to describe all the minimally non-(probe G) graphs with disconnected complement for every graph class G with a companion.

Linear Time Recognition Algorithms and Structure Theorems for Bipartite Tolerance Graphs and Bipartite Probe Interval Graphs

Graphs and Algorithms International audience A graph is a probe interval graph if its vertices can be partitioned into probes and nonprobes with an interval associated to each vertex so that vertices are adjacent if and only if their corresponding intervals intersect and at least one of them is a probe. A graph G = (V, E) is a tolerance graph if each vertex v is an element of V can be associated to an interval I(v) of the real line and a positive real number t(v) such that uv is an element of E if and only if vertical bar I(u) boolean AND I(v)vertical bar >= min \t(u), t(v)\. In this paper we present O(vertical bar V vertical bar + vertical bar E vertical bar) recognition algorithms for both bipartite probe interval graphs and bipartite tolerance graphs. We also give a new structural characterization for each class which follows from the algorithms.