varkud satellite ribozyme
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Engineering of the Neurospora Varkud Satellite Ribozyme for Cleavage of Nonnatural Stem‐Loop Substrates

Ribozymes ◽  
2021 ◽  
pp. 463-485
Author(s):  
Pierre Dagenais ◽  
Julie Lacroix‐Labonté ◽  
Nicolas Girard ◽  
Pascale Legault
Keyword(s):  
Stem Loop ◽  
Varkud Satellite Ribozyme

scholarly journals Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme

2020 ◽  
Vol 12 (2) ◽  
pp. 193-201 ◽  
Author(s):  
Abir Ganguly ◽  
Benjamin P. Weissman ◽  
Timothy J. Giese ◽  
Nan-Sheng Li ◽  
Shuichi Hoshika ◽  
...  
Keyword(s):  
Catalytic Mechanism ◽  
Varkud Satellite Ribozyme ◽  
Theory And Experiment

scholarly journals Structural Basis for Substrate Helix Remodeling and Cleavage Loop Activation in the Varkud Satellite Ribozyme

2017 ◽  
Vol 139 (28) ◽  
pp. 9591-9597 ◽  
Author(s):  
Saurja DasGupta ◽  
Nikolai B. Suslov ◽  
Joseph A. Piccirilli
Keyword(s):  
Structural Basis ◽  
Varkud Satellite Ribozyme ◽  
Loop Activation

scholarly journals Mg 2+ Binding Promotes SLV as a Scaffold in Varkud Satellite Ribozyme SLI-SLV Kissing Loop Junction

2017 ◽  
Vol 113 (2) ◽  
pp. 313-320 ◽  
Author(s):  
Christina Bergonzo ◽  
Thomas E. Cheatham
Keyword(s):  
Varkud Satellite Ribozyme ◽  
Kissing Loop

scholarly journals Crystal structure of the Varkud satellite ribozyme

2015 ◽  
Vol 11 (11) ◽  
pp. 840-846 ◽  
Author(s):  
Nikolai B Suslov ◽  
Saurja DasGupta ◽  
Hao Huang ◽  
James R Fuller ◽  
David M J Lilley ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Varkud Satellite Ribozyme

Catalysis by the nucleolytic ribozymes

2011 ◽  
Vol 39 (2) ◽  
pp. 641-646 ◽  
Author(s):  
David M.J. Lilley
Keyword(s):  
Base Catalysis ◽  
Hairpin Ribozyme ◽  
Cleavage Reaction ◽  
Acid Base ◽  
Rate Enhancement ◽  
General Base ◽  
General Acid ◽  
Varkud Satellite Ribozyme

The nucleolytic ribozymes use general acid–base catalysis to contribute significantly to their rate enhancement. The VS (Varkud satellite) ribozyme uses a guanine and an adenine nucleobase as general base and acid respectively in the cleavage reaction. The hairpin ribozyme is probably closely similar, while the remaining nucleolytic ribozymes provide some interesting contrasts.

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