compound microsatellite
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2015 ◽  
Vol 61 (12) ◽  
pp. 898-902 ◽  
Author(s):  
Zarrin Basharat ◽  
Azra Yasmin

Distinct simple sequence repeats with 2 or more individual microsatellites joined together or lying adjacent to each other are identified as compound microsatellites. Investigation of such composite microsatellites in the genomes of genus Lactobacillus was the aim of this study. In silico inspection of microsatellite clustering in genomes of 14 Lactobacillus species revealed a wealth of compound microsatellites. All of the mined compound microsatellites were imperfect, were composed of variant motifs, and increased in all genomes, with maximum distance (dMAX) increments of 10 to 50. The majority of these repeats were present in the coding regions. A correlation of microsatellite to compound microsatellite density was detected. The difference established in compound microsatellite division among eukaryotes, Escherichia coli, and lactobacilli is suggestive of diverse genomic features and elementary distinction between creation and fixation methods of compound microsatellites among these organisms.



2012 ◽  
Vol 99 (1) ◽  
pp. e20-e23 ◽  
Author(s):  
Koh Nakamura ◽  
Chiun-Jr Huang ◽  
Rosario Rivera Rubite ◽  
Wai-Chao Leong ◽  
Yoshiko Kono ◽  
...  


2011 ◽  
Vol 98 (3) ◽  
pp. e64-e66 ◽  
Author(s):  
X.-h. Xu ◽  
Y. Wan ◽  
Z.-C. Qi ◽  
Y.-x. Qiu ◽  
C.-X. Fu


2010 ◽  
Vol 97 (12) ◽  
pp. e139-e141 ◽  
Author(s):  
Sheng-Nan Zhai ◽  
Xiao-Ling Yan ◽  
Koh Nakamura ◽  
Misako Mishima ◽  
Ying-Xiong Qiu


2009 ◽  
Vol 9 (3) ◽  
pp. 915-917 ◽  
Author(s):  
S-Y. CHO ◽  
S. NAGAI ◽  
G. NISHITANI ◽  
M-S. HAN


2009 ◽  
Vol 10 (5) ◽  
pp. 1561-1563 ◽  
Author(s):  
Goh Nishitani ◽  
Satoshi Nagai ◽  
Yuichi Kotani


2008 ◽  
Vol 8 (4) ◽  
pp. 814-817 ◽  
Author(s):  
BINGYUN WU ◽  
AKIKO SHIOKAWA ◽  
NORIHISA MATSUSHITA ◽  
TAIZO HOGETSU


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