linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser

In biology, we are often confronted with information-rich, large-scale trajectory data, but exploring and communicating patterns in such data can be a cumbersome task. Ideally, the data should be wrapped with an interactive visualisation in one concise packet that makes it straightforward to create and test hypotheses collaboratively. To address these challenges, we have developed a tool, linus, which makes the process of exploring and sharing 3D trajectories as easy as browsing a website. We provide a python script that reads trajectory data, enriches them with additional features such as edge bundling or custom axes, and generates an interactive web-based visualisation that can be shared online. linus facilitates the collaborative discovery of patterns in complex trajectory data.

Similarity-Driven Edge Bundling: Data-Oriented Clutter Reduction in Graphs Layouts

Graph visualization has been successfully applied in a wide range of problems and applications. Although different approaches are available to create visual representations, most of them suffer from clutter when faced with many nodes and/or edges. Among the techniques that address this problem, edge bundling has attained relative success in improving node-link layouts by bending and aggregating edges. Despite their success, most approaches perform the bundling based only on visual space information. There is no explicit connection between the produced bundled visual representation and the underlying data (edges or vertices attributes). In this paper, we present a novel edge bundling technique, called Similarity-Driven Edge Bundling (SDEB), to address this issue. Our method creates a similarity hierarchy based on a multilevel partition of the data, grouping edges considering the similarity between nodes to guide the bundling. The novel features introduced by SDEB are explored in different application scenarios, from dynamic graph visualization to multilevel exploration. Our results attest that SDEB produces layouts that consistently follow the similarity relationships found in the graph data, resulting in semantically richer presentations that are less cluttered than the state-of-the-art.

linus: Conveniently explore, share and present large-scale biological trajectory data from a web browser.

In biology, we are often confronted with information-rich, large-scale trajectory data, but exploring and communicating patterns in such data is often a cumbersome task. Ideally, the data should be wrapped with an interactive visualisation in one concise package that makes it straightforward to create and test hypotheses collaboratively. To address these challenges, we have developed a tool, linus, which makes the process of exploring and sharing 3D trajectories as easy as browsing a website. We provide a python script that reads trajectory data and enriches them with additional features, such as edge bundling or custom axes and generates an interactive web-based visualisation that can be shared offline and online. The goal of linus is to facilitate the collaborative discovery of patterns in complex trajectory data.