löwdin α function
Recently Published Documents


TOTAL DOCUMENTS

4
(FIVE YEARS 2)

H-INDEX

2
(FIVE YEARS 1)

2020 ◽  
Vol 76 (6) ◽  
pp. 630-651
Author(s):  
Daniel Nguyen ◽  
Piero Macchi ◽  
Anatoliy Volkov

The previously reported exact potential and multipole moment (EP/MM) method for fast and accurate evaluation of the intermolecular electrostatic interaction energies using the pseudoatom representation of the electron density [Volkov, Koritsanszky & Coppens (2004). Chem. Phys. Lett. 391, 170–175; Nguyen, Kisiel & Volkov (2018). Acta Cryst. A74, 524–536; Nguyen & Volkov (2019). Acta Cryst. A75, 448–464] is extended to the calculation of electrostatic interaction energies in molecular crystals using two newly developed implementations: (i) the Ewald summation (ES), which includes interactions up to the hexadecapolar level and the EP correction to account for short-range electron-density penetration effects, and (ii) the enhanced EP/MM-based direct summation (DS), which at sufficiently large intermolecular separations replaces the atomic multipole moment approximation to the electrostatic energy with that based on the molecular multipole moments. As in the previous study [Nguyen, Kisiel & Volkov (2018). Acta Cryst. A74, 524–536], the EP electron repulsion integral is evaluated analytically using the Löwdin α-function approach. The resulting techniques, incorporated in the XDPROP module of the software package XD2016, have been tested on several small-molecule crystal systems (benzene, L-dopa, paracetamol, amino acids etc.) and the crystal structure of a 181-atom decapeptide molecule (Z = 4) using electron densities constructed via the University at Buffalo Aspherical Pseudoatom Databank [Volkov, Li, Koritsanszky & Coppens (2004). J. Phys. Chem. A, 108, 4283–4300]. Using a 2015 2.8 GHz Intel Xeon E3-1505M v5 computer processor, a 64-bit implementation of the Löwdin α-function and one of the higher optimization levels in the GNU Fortran compiler, the ES method evaluates the electrostatic interaction energy with a numerical precision of at least 10−5 kJ mol−1 in under 6 s for any of the tested small-molecule crystal structures, and in 48.5 s for the decapeptide structure. The DS approach is competitive in terms of precision and speed with the ES technique only for crystal structures of small molecules that do not carry a large molecular dipole moment. The electron-density penetration effects, correctly accounted for by the two described methods, contribute 28–64% to the total electrostatic interaction energy in the examined systems, and thus cannot be neglected.


2019 ◽  
Vol 75 (3) ◽  
pp. 448-464 ◽  
Author(s):  
Daniel Nguyen ◽  
Anatoliy Volkov

The Fourier transform method for analytical determination of the two-center Coulomb integrals needed for evaluation of the electrostatic interaction energies between pseudoatom-based charge distributions is presented, and its Fortran-based implementation using the 128-bit floating-point arithmetic in theXDPROPmodule of theXDsoftware is described. In combination with mathematical libraries included in the Lahey/Fujitsu LF64 Linux compiler, the new implementation outperforms the previously reported Löwdin α-function technique [Nguyenet al.(2018).Acta Cryst.A74, 524–536] in terms of precision of the determined individual Coulomb integrals regardless of whether the latter uses the 64-, 80- or 128-bit precision floating-point format, all the while being only marginally slower. When the Löwdin α-function or Fourier transform method is combined with a multipole moment approximation for large interatomic separations (such a hybrid scheme is called the analytical exact potential and multipole moment method, aEP/MM) the resulting electrostatic interaction energies are evaluated with a precision of ≤5 × 10−5 kJ mol−1for the current set of benchmark systems composed of H, C, N and O atoms and ranging in size from water–water to dodecapeptide–dodecapeptide dimers. Using a 2012 4.0 GHz AMD FX-8350 computer processor, the two recommended aEP/MM implementations, the 80-bit precision Löwdin α-function and 128-bit precision Fourier transform methods, evaluate the total electrostatic interaction energy between two 225-atom monomers of the benchmark dodecapeptide molecule in 6.0 and 7.9 s, respectively, versus 3.1 s for the previously reported 64-bit Löwdin α-function approach.


2005 ◽  
Vol 70 (8) ◽  
pp. 1035-1054 ◽  
Author(s):  
Nemanja Sovic ◽  
James D. Talman

The problem of expanding an angular momentum wave function centered at one point in terms of angular momentum wave functions centered at another point is analysed. The emphasis is on obtaining methods that can be applied to functions that are defined numerically, in contrast to analytic methods. Three numerical approaches are described, and it is found that one leads to extremely accurate results. The question of the rate of convergence of the resulting series is discussed, and results of the application of the expansion to the calculation of nuclear attraction three-center integrals, and electron-electron four-center integrals are presented.


Sign in / Sign up

Export Citation Format

Share Document