An Imidazolium‐Based Lipid Analogue as a Gene Transfer Agent

2020 ◽  
Vol 26 (71) ◽  
pp. 17176-17182 ◽  
Author(s):  
Tiffany O. Paulisch ◽  
Steffen Bornemann ◽  
Marius Herzog ◽  
Sergej Kudruk ◽  
Lena Roling ◽  
...  
2008 ◽  
Vol 74 (10) ◽  
pp. 2933-2939 ◽  
Author(s):  
Erin J. Biers ◽  
Kui Wang ◽  
Catherine Pennington ◽  
Robert Belas ◽  
Feng Chen ◽  
...  

ABSTRACT Genes with homology to the transduction-like gene transfer agent (GTA) were observed in genome sequences of three cultured members of the marine Roseobacter clade. A broader search for homologs for this host-controlled virus-like gene transfer system identified likely GTA systems in cultured Alphaproteobacteria, and particularly in marine bacterioplankton representatives. Expression of GTA genes and extracellular release of GTA particles (∼50 to 70 nm) was demonstrated experimentally for the Roseobacter clade member Silicibacter pomeroyi DSS-3, and intraspecific gene transfer was documented. GTA homologs are surprisingly infrequent in marine metagenomic sequence data, however, and the role of this lateral gene transfer mechanism in ocean bacterioplankton communities remains unclear.


Cell Systems ◽  
2017 ◽  
Vol 4 (6) ◽  
pp. 611-621.e6 ◽  
Author(s):  
Maxime Québatte ◽  
Matthias Christen ◽  
Alexander Harms ◽  
Jonas Körner ◽  
Beat Christen ◽  
...  

PLoS ONE ◽  
2012 ◽  
Vol 7 (8) ◽  
pp. e43506 ◽  
Author(s):  
Lauren D. McDaniel ◽  
Elizabeth C. Young ◽  
Kimberly B. Ritchie ◽  
John H. Paul

2018 ◽  
Vol 84 (11) ◽  
Author(s):  
Alexander B. Westbye ◽  
Lukas Kater ◽  
Christina Wiesmann ◽  
Hao Ding ◽  
Calvin K. Yip ◽  
...  

ABSTRACTSeveral members of theRhodobacterales(Alphaproteobacteria) produce a conserved horizontal gene transfer vector, called the gene transfer agent (GTA), that appears to have evolved from a bacteriophage. The model system used to study GTA biology is theRhodobacter capsulatusGTA (RcGTA), a small, tailed bacteriophage-like particle produced by a subset of the cells in a culture. The response regulator CtrA is conserved in theAlphaproteobacteriaand is an essential regulator of RcGTA production: it controls the production and maturation of the RcGTA particle and RcGTA release from cells. CtrA also controls the natural transformation-like system required for cells to receive RcGTA-donated DNA. Here, we report that dysregulation of the CckA-ChpT-CtrA phosphorelay either by the loss of the PAS domain protein DivL or by substitution of the autophosphorylation residue of the hybrid histidine kinase CckA decreased CtrA phosphorylation and greatly increased RcGTA protein production inR. capsulatus. We show that the loss of the ClpXP protease or the three C-terminal residues of CtrA results in increased CtrA levels inR. capsulatusand identify ClpX(P) to be essential for the maturation of RcGTA particles. Furthermore, we show that CtrA phosphorylation is important for head spike production. Our results provide novel insight into the regulation of CtrA and GTAs in theRhodobacterales.IMPORTANCEMembers of theRhodobacteralesare abundant in ocean and freshwater environments. The conserved GTA produced by manyRhodobacteralesmay have an important role in horizontal gene transfer (HGT) in aquatic environments and provide a significant contribution to their adaptation. GTA production is controlled by bacterial regulatory systems, including the conserved CckA-ChpT-CtrA phosphorelay; however, several questions about GTA regulation remain. Our identification that a short DivL homologue and ClpXP regulate CtrA inR. capsulatusextends the model of CtrA regulation fromCaulobacter crescentusto a member of theRhodobacterales. We found that the magnitude of RcGTA production greatly depends on DivL and CckA kinase activity, adding yet another layer of regulatory complexity to RcGTA. RcGTA is known to undergo CckA-dependent maturation, and we extend the understanding of this process by showing that the ClpX chaperone is required for formation of tailed, DNA-containing particles.


Author(s):  
Molly M. Leung ◽  
Sarah M. Florizone ◽  
Terumi A. Taylor ◽  
Andrew S. Lang ◽  
J. Thomas Beatty

2019 ◽  
Vol 93 (23) ◽  
Author(s):  
D. Sherlock ◽  
J. X. Leong ◽  
P. C. M. Fogg

ABSTRACT Genetic exchange mediated by viruses of bacteria (bacteriophages) is the primary driver of rapid bacterial evolution. The priority of viruses is usually to propagate themselves. Most bacteriophages use the small terminase protein to identify their own genome and direct its inclusion into phage capsids. Gene transfer agents (GTAs) are descended from bacteriophages, but they instead package fragments of the entire bacterial genome without preference for their own genes. GTAs do not selectively target specific DNA, and no GTA small terminases are known. Here, we identified the small terminase from the model Rhodobacter capsulatus GTA, which then allowed prediction of analogues in other species. We examined the role of the small terminase in GTA production and propose a structural basis for random DNA packaging. IMPORTANCE Random transfer of any and all genes between bacteria could be influential in the spread of virulence or antimicrobial resistance genes. Discovery of the true prevalence of GTAs in sequenced genomes is hampered by their apparent similarity to bacteriophages. Our data allowed the prediction of small terminases in diverse GTA producer species, and defining the characteristics of a “GTA-type” terminase could be an important step toward novel GTA identification. Importantly, the GTA small terminase shares many features with its phage counterpart. We propose that the GTA terminase complex could become a streamlined model system to answer fundamental questions about double-stranded DNA (dsDNA) packaging by viruses that have not been forthcoming to date.


1995 ◽  
Vol 24 (6) ◽  
pp. 473-474 ◽  
Author(s):  
Jean-Marc Weibel ◽  
Antoine Kichler ◽  
Jean-Serge Remy ◽  
Christian Gaiddon ◽  
Jean-Philippe Loeffler ◽  
...  

Biomaterials ◽  
2013 ◽  
Vol 34 (38) ◽  
pp. 10267-10277 ◽  
Author(s):  
Eric W.F.W. Alton ◽  
Alison Baker ◽  
Eilidh Baker ◽  
A. Christopher Boyd ◽  
Seng H. Cheng ◽  
...  

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