A comparative genome‐wide analysis of the ABC transporter gene family among three Gossypium species and the evidence for a role of some GhABCs in fiber development and response to stresses

Crop Science ◽  
2021 ◽  
Author(s):  
Baolu Cui ◽  
Yan Li ◽  
Yanjie Zhang
Keyword(s):  
Gene Family ◽  
Abc Transporter ◽  
Fiber Development ◽  
Transporter Gene ◽  
Comparative Genome ◽  
Genome Wide Analysis ◽  
Gossypium Species ◽  
Genome Wide

Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in the silkworm, Bombyx mori

2012 ◽  
Vol 39 (7) ◽  
pp. 7281-7291 ◽  
Author(s):  
Xiaodong Xie ◽  
Tingcai Cheng ◽  
Genhong Wang ◽  
Jun Duan ◽  
Weihuan Niu ◽  
...  
Keyword(s):  
Gene Family ◽  
Bombyx Mori ◽  
Abc Transporter ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Silkworm Bombyx Mori ◽  
Atp Binding Cassette

scholarly journals Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
Author(s):  
Jianfeng Ren ◽  
Yu-Wen Chung-Davidson ◽  
Chu-Yin Yeh ◽  
Camille Scott ◽  
Titus Brown ◽  
...  
Keyword(s):  
Gene Family ◽  
Abc Transporter ◽  
Sea Lamprey ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Atp Binding Cassette

scholarly journals Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
Author(s):  
Yongqin Wang ◽  
Chenglin Chai ◽  
Babu Valliyodan ◽  
Christine Maupin ◽  
Brad Annen ◽  
...  
Keyword(s):  
Glycine Max ◽  
Gene Family ◽  
Expression Profiling ◽  
Transporter Gene ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Auxin Transporter

scholarly journals In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling

2019 ◽  
Vol 2019 ◽  
pp. 1-14 ◽  
Author(s):  
Awdhesh Kumar Mishra ◽  
Jinhee Choi ◽  
Muhammad Fazle Rabbee ◽  
Kwang-Hyun Baek
Keyword(s):  
Gene Family ◽  
Abc Transporter ◽  
Abc Transporters ◽  
In Silico ◽  
Gene Families ◽  
Protein Domain ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide ◽  
Atp Binding Cassette

ATP-binding cassette (ABC) transporters constitute one of the largest gene families in all living organisms, most of which mediate transport across biological membranes by hydrolyzing ATP. However, detailed studies of ABC transporter genes in the important oil crop, soybean, are still lacking. In the present study, we carried out genome-wide identification and phylogenetic and transcriptional analyses of the ABC gene family in G. max. A total of 261 G. max ABC (GmABCs) genes were identified and unevenly localized onto 20 chromosomes. Referring to protein-domain orientation and phylogeny, the GmABC family could be classified into eight (ABCA-ABCG and ABCI) subfamilies and ABCG were the most abundantly present. Further, investigation of whole genome duplication (WGD) signifies the role of segmental duplication in the expansion of the ABC transporter gene family in soybean. The Ka/Ks ratio indicates that several duplicated genes are governed by intense purifying selection during evolution. In addition, in silico expression analysis based on RNA-sequence using publicly available database revealed that ABC transporters are differentially expressed in tissues and developmental stages and in dehydration. Overall, we provide an extensive overview of the GmABC transporter gene family and it promises the primary basis for the study in development and response to dehydration tolerance.

scholarly journals Genome-Wide Analysis of the NF-YB Gene Family in Gossypium hirsutum L. and Characterization of the Role of GhDNF-YB22 in Embryogenesis

2018 ◽  
Vol 19 (2) ◽  
pp. 483 ◽  
Author(s):  
Yanli Chen ◽  
Zhaoen Yang ◽  
Yanqing Xiao ◽  
Peng Wang ◽  
Ye Wang ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Gene Family ◽  
Gossypium Hirsutum L ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Comprehensive Genome-Wide Analysis of the Aux/IAA Gene Family in Eucalyptus: Evidence for the Role of EgrIAA4 in Wood Formation

2015 ◽  
Vol 56 (4) ◽  
pp. 700-714 ◽  
Author(s):  
Hong Yu ◽  
Marçal Soler ◽  
Hélène San Clemente ◽  
Isabelle Mila ◽  
Jorge A.P. Paiva ◽  
...  
Keyword(s):  
Gene Family ◽  
Wood Formation ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis of CrRLK1L gene family in Gossypium and identification of candidate CrRLK1L genes related to fiber development

2016 ◽  
Vol 291 (3) ◽  
pp. 1137-1154 ◽  
Author(s):  
Erli Niu ◽  
Caiping Cai ◽  
Yongjie Zheng ◽  
Xiaoguang Shang ◽  
Lei Fang ◽  
...  
Keyword(s):  
Gene Family ◽  
Fiber Development ◽  
Genome Wide Analysis ◽  
Genome Wide
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