Improved sequence-based prediction of protein secondary structures by combining vacuum-ultraviolet circular dichroism spectroscopy with neural network

Koichi Matsuo; Hidenori Watanabe; Kunihiko Gekko

doi:10.1002/prot.22055

Improved sequence-based prediction of protein secondary structures by combining vacuum-ultraviolet circular dichroism spectroscopy with neural network

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.22055 ◽

2008 ◽

Vol 73 (1) ◽

pp. 104-112 ◽

Cited By ~ 21

Author(s):

Koichi Matsuo ◽

Hidenori Watanabe ◽

Kunihiko Gekko

Keyword(s):

Neural Network ◽

Circular Dichroism ◽

Vacuum Ultraviolet ◽

Secondary Structures ◽

Circular Dichroism Spectroscopy ◽

Protein Secondary Structures ◽

Circular Dichroïsm

Improved Estimation of the Secondary Structures of Proteins by Vacuum-Ultraviolet Circular Dichroism Spectroscopy

The Journal of Biochemistry ◽

10.1093/jb/mvi101 ◽

2005 ◽

Vol 138 (1) ◽

pp. 79-88 ◽

Cited By ~ 48

Author(s):

Koichi Matsuo ◽

Ryuta Yonehara ◽

Kunihiko Gekko

Keyword(s):

Circular Dichroism ◽

Vacuum Ultraviolet ◽

Secondary Structures ◽

Circular Dichroism Spectroscopy ◽

Circular Dichroïsm

A reference dataset for the analyses of membrane protein secondary structures and transmembrane residues using circular dichroism spectroscopy

Bioinformatics ◽

10.1093/bioinformatics/btr234 ◽

2011 ◽

Vol 27 (12) ◽

pp. 1630-1636 ◽

Cited By ~ 88

Author(s):

Ali Abdul-Gader ◽

Andrew John Miles ◽

B. A. Wallace

Keyword(s):

Circular Dichroism ◽

Membrane Protein ◽

Secondary Structures ◽

Circular Dichroism Spectroscopy ◽

Reference Dataset ◽

Protein Secondary Structures ◽

Circular Dichroïsm

Compact optical cell system for vacuum ultraviolet absorption and circular dichroism spectroscopy and its application to aqueous solution sample

Chirality ◽

10.1002/chir.20579 ◽

2008 ◽

Vol 20 (9) ◽

pp. 1023-1028 ◽

Cited By ~ 1

Author(s):

Masahito Tanaka ◽

Kazutoshi Yagi-Watanabe ◽

Fusae Kaneko ◽

Kazumichi Nakagawa

Keyword(s):

Aqueous Solution ◽

Circular Dichroism ◽

Vacuum Ultraviolet ◽

Cell System ◽

Circular Dichroism Spectroscopy ◽

Ultraviolet Absorption ◽

Optical Cell ◽

Solution Sample ◽

Circular Dichroïsm

Further Characterization of Protein Secondary Structures in Purple Membrane by Circular Dichroism and Polarized Infrared Spectroscopies

Biophysical Journal ◽

10.1016/s0006-3495(85)83848-0 ◽

1985 ◽

Vol 48 (6) ◽

pp. 873-876 ◽

Cited By ~ 27

Author(s):

E. Nabedryk ◽

A.M. Bardin ◽

J. Breton

Keyword(s):

Circular Dichroism ◽

Secondary Structures ◽

Purple Membrane ◽

Protein Secondary Structures ◽

Circular Dichroïsm

1P-017 Secondary-Structure Analysis of Proteins Interacting with Membrane by a Vacuum-Ultraviolet Circular Dichroism Spectroscopy(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s23_3 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S23

Author(s):

Koichi Matsuo ◽

Hirofumi Namatame ◽

Masaki Taniguchi ◽

Kunihiko Gekko

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Annual Meeting ◽

Structure Analysis ◽

Vacuum Ultraviolet ◽

Circular Dichroism Spectroscopy ◽

Secondary Structure Analysis ◽

Biophysical Society ◽

Circular Dichroïsm

Secondary-Structure Analysis of Proteins by Vacuum-Ultraviolet Circular Dichroism Spectroscopy

The Journal of Biochemistry ◽

10.1093/jb/mvh048 ◽

2004 ◽

Vol 135 (3) ◽

pp. 405-411 ◽

Cited By ~ 78

Author(s):

K. Matsuo

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Structure Analysis ◽

Vacuum Ultraviolet ◽

Circular Dichroism Spectroscopy ◽

Secondary Structure Analysis ◽

Circular Dichroïsm

Secondary-structure analysis of alcohol-denatured proteins by vacuum-ultraviolet circular dichroism spectroscopy

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.23206 ◽

2011 ◽

Vol 80 (1) ◽

pp. 281-293 ◽

Cited By ~ 21

Author(s):

Koichi Matsuo ◽

Yoshie Sakurada ◽

Shin-ichi Tate ◽

Hirofumi Namatame ◽

Masaki Taniguchi ◽

...

Keyword(s):

Circular Dichroism ◽

Secondary Structure ◽

Structure Analysis ◽

Vacuum Ultraviolet ◽

Circular Dichroism Spectroscopy ◽

Secondary Structure Analysis ◽

Denatured Proteins ◽

Circular Dichroïsm

Characterization of the mechanism of interaction between α 1 ‐acid glycoprotein and lipid membranes by vacuum‐ultraviolet circular‐dichroism spectroscopy

Chirality ◽

10.1002/chir.23208 ◽

2020 ◽

Vol 32 (5) ◽

pp. 594-604

Author(s):

Koichi Matsuo ◽

Munehiro Kumashiro ◽

Kunihiko Gekko

Keyword(s):

Circular Dichroism ◽

Lipid Membranes ◽

Vacuum Ultraviolet ◽

Circular Dichroism Spectroscopy ◽

Acid Glycoprotein ◽

Mechanism Of Interaction ◽

Circular Dichroïsm

Conformation of Myelin Basic Protein Bound to Phosphatidylinositol Membrane Characterized by Vacuum‐Ultraviolet Circular‐Dichroism Spectroscopy and Molecular‐Dynamics Simulations

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.26146 ◽

2021 ◽

Author(s):

Munehiro Kumashiro ◽

Yudai Izumi ◽

Koichi Matsuo

Keyword(s):

Molecular Dynamics ◽

Circular Dichroism ◽

Myelin Basic Protein ◽

Molecular Dynamics Simulations ◽

Vacuum Ultraviolet ◽

Basic Protein ◽

Circular Dichroism Spectroscopy ◽

Dynamics Simulations ◽

Circular Dichroïsm

1P086 Vacuum-Ultraviolet Circular Dichroism Spectroscopy of Heat and Cold-Denatured Proteins

Seibutsu Butsuri ◽

10.2142/biophys.44.s51_2 ◽

2004 ◽

Vol 44 (supplement) ◽

pp. S51

Author(s):

K. Matsuo ◽

Y. Sakurada ◽

R. Yonehara ◽

M. Kataoka ◽

K. Gekko

Keyword(s):

Circular Dichroism ◽

Vacuum Ultraviolet ◽

Circular Dichroism Spectroscopy ◽

Denatured Proteins ◽

Circular Dichroïsm