scholarly journals The MLO1 powdery mildew susceptibility gene in Lathyrus species: The power of high‐density linkage maps in comparative mapping and synteny analysis

2021 ◽  
Author(s):  
Carmen Santos ◽  
Carlos Polanco ◽  
Diego Rubiales ◽  
Maria Carlota Vaz Patto
PLoS ONE ◽  
2016 ◽  
Vol 11 (3) ◽  
pp. e0150692 ◽  
Author(s):  
Chunfa Tong ◽  
Huogen Li ◽  
Ying Wang ◽  
Xuran Li ◽  
Jiajia Ou ◽  
...  

Author(s):  
Harshavardan J. Hilli

Bulked segregant analysis (BSA) is a technique used to identify genetic markers associated with a mutant phenotype and is a quick method for identifying markers in particular genome regions. The paper focussed on Advanced methods which escape the requirement of genotyping all the individuals of the mapping population and generation of high-density linkage maps for mapping of the gene for the trait of interest. With the emergence of re-sequencing techniques, quick mapping of genes has become possible with reduced time and cost by using advanced methodologies like MutMap, MutMap+, MutMap-Gap, QTL-Seq, RNAseq BSA, NGS BSA and QTG seq. The procedure for various advanced BSA strategies has been described.


2019 ◽  
Vol 132 (5) ◽  
pp. 1571-1585 ◽  
Author(s):  
Jennifer Lewter ◽  
Margaret L. Worthington ◽  
John R. Clark ◽  
Aruna V. Varanasi ◽  
Lacy Nelson ◽  
...  

BMC Genetics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 113 ◽  
Author(s):  
Xinxin You ◽  
Liping Shu ◽  
Shuisheng Li ◽  
Jieming Chen ◽  
Jian Luo ◽  
...  

Blood ◽  
2007 ◽  
Vol 110 (9) ◽  
pp. 3326-3333 ◽  
Author(s):  
Gabrielle S. Sellick ◽  
Lynn R. Goldin ◽  
Ruth W. Wild ◽  
Susan L. Slager ◽  
Laura Ressenti ◽  
...  

Abstract Chronic lymphocytic leukemia (CLL) and other B-cell lymphoproliferative disorders display familial aggregation. To identify a susceptibility gene for CLL, we assembled families from the major European (ICLLC) and American (GEC) consortia to conduct a genome-wide linkage analysis of 101 new CLL pedigrees using a high-density single nucleotide polymorphism (SNP) array and combined the results with data from our previously reported analysis of 105 families. Here, we report on the combined analysis of the 206 families. Multipoint linkage analyses were undertaken using both nonparametric (model-free) and parametric (model-based) methods. After the removal of high linkage disequilibrium SNPs, we obtained a maximum nonparametric linkage (NPL) score of 3.02 (P = .001) on chromosome 2q21.2. The same genomic position also yielded the highest multipoint heterogeneity LOD (HLOD) score under a common recessive model of disease susceptibility (HLOD = 3.11; P = 7.7 × 10−5), which was significant at the genome-wide level. In addition, 2 other chromosomal positions, 6p22.1 (corresponding to the major histocompatibility locus) and 18q21.1, displayed HLOD scores higher than 2.1 (P < .002). None of the regions coincided with areas of common chromosomal abnormalities frequently observed in CLL. These findings provide direct evidence for Mendelian predisposition to CLL and evidence for the location of disease loci.


Genomics ◽  
2005 ◽  
Vol 86 (5) ◽  
pp. 505-517 ◽  
Author(s):  
Alessandra C. Cervino ◽  
Guoya Li ◽  
Steve Edwards ◽  
Jun Zhu ◽  
Cathy Laurie ◽  
...  

2013 ◽  
Vol 40 (2) ◽  
pp. 95-106 ◽  
Author(s):  
Baozhu Guo ◽  
Manish K. Pandey ◽  
Guohao He ◽  
Xinyou Zhang ◽  
Boshou Liao ◽  
...  

ABSTRACT The competitiveness of peanuts in domestic and global markets has been threatened by losses in productivity and quality that are attributed to diseases, pests, environmental stresses and allergy or food safety issues. Narrow genetic diversity and a deficiency of polymorphic DNA markers severely hindered construction of dense genetic maps and quantitative trait loci (QTL) mapping in order to deploy linked markers in marker-assisted peanut improvement. The U.S. Peanut Genome Initiative (PGI) was launched in 2004, and expanded to a global effort in 2006 to address these issues through coordination of international efforts in genome research beginning with molecular marker development and improvement of map resolution and coverage. Ultimately, a peanut genome sequencing project was launched in 2012 by the Peanut Genome Consortium (PGC). We reviewed the progress for accelerated development of peanut genomic resources in peanut, such as generation of expressed sequenced tags (ESTs) (252,832 ESTs as December 2012 in the public NCBI EST database), development of molecular markers (over 15,518 SSRs), and construction of peanut genetic linkage maps, in particular for cultivated peanut. Several consensus genetic maps have been constructed, and there are examples of recent international efforts to develop high density maps. An international reference consensus genetic map was developed recently with 897 marker loci based on 11 published mapping populations. Furthermore, a high-density integrated consensus map of cultivated peanut and wild diploid relatives also has been developed, which was enriched further with 3693 marker loci on a single map by adding information from five new genetic mapping populations to the published reference consensus map.


Sign in / Sign up

Export Citation Format

Share Document