Protein–Protein Modeling Using Cryo-EM Restraints

Methods in Molecular Biology - Structural Bioinformatics ◽

10.1007/978-1-0716-0270-6_11 ◽

2020 ◽

pp. 145-162

Author(s):

Mikael Trellet ◽

Gydo van Zundert ◽

Alexandre M. J. J. Bonvin

Keyword(s):

Protein Modeling

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Evaluating the significance of contact maps in low-homology protein modeling using contact-assisted threading

Scientific Reports ◽

10.1038/s41598-020-59834-2 ◽

2020 ◽

Vol 10 (1) ◽

Author(s):

Sutanu Bhattacharya ◽

Debswapna Bhattacharya

Keyword(s):

Protein Modeling ◽

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Analysis of KIT Mutations in Sporadic and Familial Gastrointestinal Stromal Tumors: Therapeutic Implications through Protein Modeling

Clinical Cancer Research ◽

10.1158/1078-0432.ccr-04-2515 ◽

2005 ◽

Vol 11 (10) ◽

pp. 3668-3677 ◽

Author(s):

Chi Tarn ◽

Erin Merkel ◽

Adrian A. Canutescu ◽

Wei Shen ◽

Yuliya Skorobogatko ◽

...

Keyword(s):

Gastrointestinal Stromal Tumors ◽

Protein Modeling ◽

Therapeutic Implications ◽

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Analysis of KIT Mutations in Sporadic and Familial Gastrointestinal Stromal Tumors: Therapeutic Implications Through Protein Modeling

Yearbook of Oncology ◽

10.1016/s1040-1741(08)70185-4 ◽

2006 ◽

Vol 2006 ◽

pp. 267-268

Author(s):

P.J. Loehrer

Keyword(s):

Gastrointestinal Stromal Tumors ◽

Protein Modeling ◽

Therapeutic Implications ◽

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The gluconeogenic glucose-6-phosphatase gene is expressed during oxygen-limited conditions in the white shrimp Penaeus (Litopenaeus) vannamei: Molecular cloning, membrane protein modeling and transcript modulation in gills and hepatopancreas

Journal of Bioenergetics and Biomembranes ◽

10.1007/s10863-021-09903-6 ◽

2021 ◽

Author(s):

Laura E. Hernández-Aguirre ◽

Keni Cota-Ruiz ◽

Alma B. Peregrino-Uriarte ◽

Silvia Gómez-Jiménez ◽

Gloria Yepiz-Plascencia

Keyword(s):

Membrane Protein ◽

Molecular Cloning ◽

Litopenaeus Vannamei ◽

Protein Modeling ◽

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An Integrated Framework Advancing Membrane Protein Modeling and Design

PLoS Computational Biology ◽

10.1371/journal.pcbi.1004398 ◽

2015 ◽

Vol 11 (9) ◽

pp. e1004398 ◽

Author(s):

Rebecca F. Alford ◽

Julia Koehler Leman ◽

Brian D. Weitzner ◽

Amanda M. Duran ◽

Drew C. Tilley ◽

...

Keyword(s):

Membrane Protein ◽

Protein Modeling ◽

Integrated Framework

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Protein modeling using hidden Markov models: analysis of globins

[1993] Proceedings of the Twenty-sixth Hawaii International Conference on System Sciences ◽

10.1109/hicss.1993.270611 ◽

2002 ◽

Author(s):

D. Haussler ◽

A. Krogh ◽

I.S. Mian ◽

K. Sjolander

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Protein Modeling

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The Jasmonate Receptor: Protein Modeling and Photoaffinity Labeling Reveal That the CORONATINE INSENSITIVE1 Protein Binds Jasmonoyl-Isoleucine and Coronatine

The Plant Cell ◽

10.1105/tpc.109.210811 ◽

2009 ◽

Vol 21 (8) ◽

pp. 2192-2192 ◽

Author(s):

Jennifer Mach

Keyword(s):

Photoaffinity Labeling ◽

Protein Modeling ◽

Receptor Protein

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Protein modeling and molecular dynamics simulation of the two novel surfactant proteins SP-G and SP-H

Journal of Molecular Modeling ◽

10.1007/s00894-014-2513-0 ◽

2014 ◽

Vol 20 (11) ◽

Author(s):

Felix Rausch ◽

Martin Schicht ◽

Lars Bräuer ◽

Friedrich Paulsen ◽

Wolfgang Brandt

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Protein Modeling ◽

Surfactant Proteins ◽

Dynamics Simulation

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Polypeptide and Protein Modeling for Drug Design

Encyclopedia of Computational Neuroscience ◽

10.1007/978-1-4614-7320-6_732-1 ◽

2013 ◽

pp. 1-9

Author(s):

Megan L. O’Mara ◽

Evelyne Deplazes

Keyword(s):

Drug Design ◽

Protein Modeling

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Online Molecular Docking Resources

Methods and Algorithms for Molecular Docking-Based Drug Design and Discovery - Advances in Medical Technologies and Clinical Practice ◽

10.4018/978-1-5225-0115-2.ch015 ◽

2016 ◽

pp. 360-379

Author(s):

Adriana Isvoran

Keyword(s):

Molecular Docking ◽

Docking Studies ◽

Protein Modeling ◽

Online Resources ◽

Molecular Docking Studies ◽

This chapter aims to present the available online resources that are used for protein modeling with accent to online molecular docking resources. SwissDock, MTiAutoDock, and PatchDock online docking tools are described and a few illustrative examples concerning the molecular docking studies for the cytochrom P450 interactions with the fungicide difenoconazole. The results obtained using different servers based on distinct approaches are compared and the advantages and/or disadvantages of every server are illustrated.

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