Predicting and Simulating Mutational Effects on Protein Folding Kinetics

Mapping Intimacies ◽

10.1007/978-1-0716-1716-8_21 ◽

2021 ◽

pp. 373-386

Author(s):

Athi N. Naganathan

Keyword(s):

Protein Folding ◽

Folding Kinetics

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Faculty Opinions recommendation of Transition states and the meaning of Phi-values in protein folding kinetics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1001808.11568 ◽

2001 ◽

Author(s):

Lila Gierasch

Keyword(s):

Protein Folding ◽

Transition States ◽

Folding Kinetics

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Faculty Opinions recommendation of Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1031338.363675 ◽

2006 ◽

Author(s):

Valerie Daggett

Keyword(s):

Protein Folding ◽

Folding Kinetics ◽

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Cooperativity in protein-folding kinetics.

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.90.5.1942 ◽

1993 ◽

Vol 90 (5) ◽

pp. 1942-1946 ◽

Author(s):

K. A. Dill ◽

K. M. Fiebig ◽

H. S. Chan

Keyword(s):

Protein Folding ◽

Folding Kinetics

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Protein folding kinetics and thermodynamics from atomistic simulation

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.1201811109 ◽

2012 ◽

Vol 109 (44) ◽

pp. 17845-17850 ◽

Author(s):

S. Piana ◽

K. Lindorff-Larsen ◽

D. E. Shaw

Keyword(s):

Protein Folding ◽

Atomistic Simulation ◽

Folding Kinetics ◽

Kinetics And Thermodynamics

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Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation

Lecture Notes in Computer Science - Research in Computational Molecular Biology ◽

10.1007/11732990_34 ◽

2006 ◽

pp. 410-424 ◽

Author(s):

Tsung-Han Chiang ◽

Mehmet Serkan Apaydin ◽

Douglas L. Brutlag ◽

David Hsu ◽

Jean-Claude Latombe

Keyword(s):

Protein Folding ◽

Folding Kinetics

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Describing Protein Folding Kinetics by Molecular Dynamics Simulations. 1. Theory†

The Journal of Physical Chemistry B ◽

10.1021/jp037421y ◽

2004 ◽

Vol 108 (21) ◽

pp. 6571-6581 ◽

Author(s):

William C. Swope ◽

Jed W. Pitera ◽

Frank Suits

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Molecular Dynamics Simulations ◽

Folding Kinetics ◽

Dynamics Simulations

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REVISITING THE PAPER ON “APPLICATIONS OF GRAPH THEORY TO ENZYME KINETICS AND PROTEIN FOLDING KINETICS: STEADY AND NON-STEADY STATE SYSTEMS”

Journal of Bio Innovation ◽

10.46344/jbino.2020.v09i06.25 ◽

2020 ◽

Vol 9 (6) ◽

pp. 1375-1376

Author(s):

Kuo-Chen Chou

Keyword(s):

Protein Folding ◽

Graph Theory ◽

Steady State ◽

Enzyme Kinetics ◽

Folding Kinetics

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Improved theoretical description of protein folding kinetics from rotations in the phase space of relevant order parameters

The Journal of Chemical Physics ◽

10.1063/1.1760744 ◽

2004 ◽

Vol 121 (2) ◽

pp. 1114-1120 ◽

Author(s):

A. Baumketner ◽

J.-E. Shea ◽

Y. Hiwatari

Keyword(s):

Protein Folding ◽

Phase Space ◽

Theoretical Description ◽

Order Parameters ◽

Folding Kinetics

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Transition-States in Protein Folding Kinetics: The Structural Interpretation of Φ values

Journal of Molecular Biology ◽

10.1016/j.jmb.2006.10.082 ◽

2007 ◽

Vol 365 (5) ◽

pp. 1578-1586 ◽

Author(s):

Thomas R. Weikl ◽

Ken A. Dill

Keyword(s):

Protein Folding ◽

Transition States ◽

Folding Kinetics ◽

Structural Interpretation

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Backbone–Backbone H‐Bonds Make Context‐Dependent Contributions to Protein Folding Kinetics and Thermodynamics: Lessons from Amide‐to‐Ester Mutations

Peptide Solvation and H‐Bonds - Advances in Protein Chemistry ◽

10.1016/s0065-3233(05)72002-7 ◽

2005 ◽

pp. 39-78 ◽

Author(s):

Evan T. Powers ◽

Songpon Deechongkit ◽

Jeffery W. Kelly

Keyword(s):

Protein Folding ◽

Folding Kinetics ◽

Kinetics And Thermodynamics ◽

Context Dependent

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