Protein folding kinetics and thermodynamics from atomistic simulation

S. Piana; K. Lindorff-Larsen; D. E. Shaw

doi:10.1073/pnas.1201811109

Protein folding kinetics and thermodynamics from atomistic simulation

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.1201811109 ◽

2012 ◽

Vol 109 (44) ◽

pp. 17845-17850 ◽

Cited By ~ 183

Author(s):

S. Piana ◽

K. Lindorff-Larsen ◽

D. E. Shaw

Keyword(s):

Protein Folding ◽

Atomistic Simulation ◽

Folding Kinetics ◽

Kinetics And Thermodynamics

Backbone–Backbone H‐Bonds Make Context‐Dependent Contributions to Protein Folding Kinetics and Thermodynamics: Lessons from Amide‐to‐Ester Mutations

Peptide Solvation and H‐Bonds - Advances in Protein Chemistry ◽

10.1016/s0065-3233(05)72002-7 ◽

2005 ◽

pp. 39-78 ◽

Cited By ~ 46

Author(s):

Evan T. Powers ◽

Songpon Deechongkit ◽

Jeffery W. Kelly

Keyword(s):

Protein Folding ◽

Folding Kinetics ◽

Kinetics And Thermodynamics ◽

Context Dependent

Quantum dissipation theory with application to electron transfer : Protein folding kinetics and thermodynamics : a mean-field ising model

10.14711/thesis-b930741 ◽

2006 ◽

Author(s):

Yan Mo

Keyword(s):

Electron Transfer ◽

Protein Folding ◽

Ising Model ◽

Mean Field ◽

Quantum Dissipation ◽

Folding Kinetics ◽

Kinetics And Thermodynamics ◽

Transfer Protein ◽

Electron Transfer Protein

Protein Folding Kinetics and Thermodynamics from Atomistic Simulations

Physical Review Letters ◽

10.1103/physrevlett.96.238102 ◽

2006 ◽

Vol 96 (23) ◽

Cited By ~ 68

Author(s):

David van der Spoel ◽

M. Marvin Seibert

Keyword(s):

Protein Folding ◽

Atomistic Simulations ◽

Folding Kinetics ◽

Kinetics And Thermodynamics

How Well Can Simulation Predict Protein Folding Kinetics and Thermodynamics?

Annual Review of Biophysics and Biomolecular Structure ◽

10.1146/annurev.biophys.34.040204.144447 ◽

2005 ◽

Vol 34 (1) ◽

pp. 43-69 ◽

Cited By ~ 177

Author(s):

Christopher D. Snow ◽

Eric J. Sorin ◽

Young Min Rhee ◽

Vijay S. Pande

Keyword(s):

Protein Folding ◽

Folding Kinetics ◽

Kinetics And Thermodynamics

Faculty Opinions recommendation of Transition states and the meaning of Phi-values in protein folding kinetics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1001808.11568 ◽

2001 ◽

Author(s):

Lila Gierasch

Keyword(s):

Protein Folding ◽

Transition States ◽

Folding Kinetics

Faculty Opinions recommendation of Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1031338.363675 ◽

2006 ◽

Author(s):

Valerie Daggett

Keyword(s):

Protein Folding ◽

Folding Kinetics ◽

Unfolded State

Faculty Opinions recommendation of Single-molecule fluorescence resonance energy transfer studies of the human telomerase RNA pseudoknot: temperature-/urea-dependent folding kinetics and thermodynamics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718309391.793511236 ◽

2015 ◽

Author(s):

Lea Harrington

Keyword(s):

Energy Transfer ◽

Fluorescence Resonance Energy Transfer ◽

Single Molecule ◽

Resonance Energy Transfer ◽

Resonance Energy ◽

Folding Kinetics ◽

Single Molecule Fluorescence ◽

Kinetics And Thermodynamics ◽

Human Telomerase ◽

Rna Pseudoknot

Cooperativity in protein-folding kinetics.

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.90.5.1942 ◽

1993 ◽

Vol 90 (5) ◽

pp. 1942-1946 ◽

Cited By ~ 328

Author(s):

K. A. Dill ◽

K. M. Fiebig ◽

H. S. Chan

Keyword(s):

Protein Folding ◽

Folding Kinetics

Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation

Lecture Notes in Computer Science - Research in Computational Molecular Biology ◽

10.1007/11732990_34 ◽

2006 ◽

pp. 410-424 ◽

Cited By ~ 1

Author(s):

Tsung-Han Chiang ◽

Mehmet Serkan Apaydin ◽

Douglas L. Brutlag ◽

David Hsu ◽

Jean-Claude Latombe

Keyword(s):

Protein Folding ◽

Folding Kinetics

Kinetics and Thermodynamics of Protein Folding

Thermodynamics - Kinetics of Dynamic Systems ◽

10.5772/23324 ◽

2011 ◽

Author(s):

Hongxing Lei ◽

Yong Du

Keyword(s):

Protein Folding ◽

Kinetics And Thermodynamics