High Performance Network Architectures for Data Intensive Computing

2011 ◽  
pp. 3-23 ◽  
Author(s):  
Geng Lin ◽  
Eileen Liu
Keyword(s):  
High Performance ◽  
Network Architectures ◽  
Data Intensive Computing ◽  
Data Intensive

Hardware Technologies for High-Performance Data-Intensive Computing

Computer ◽  
2008 ◽  
Vol 41 (4) ◽  
pp. 60-68 ◽  
Author(s):  
Maya Gokhale ◽  
Jonathan Cohen ◽  
Andy Yoo ◽  
W. Marcus Miller ◽  
Arpith Jacob ◽  
...  
Keyword(s):  
High Performance ◽  
Performance Data ◽  
Data Intensive Computing ◽  
Data Intensive

scholarly journals Enabling Large-Scale Biomedical Analysis in the Cloud

2013 ◽  
Vol 2013 ◽  
pp. 1-6 ◽  
Author(s):  
Ying-Chih Lin ◽  
Chin-Sheng Yu ◽  
Yen-Jen Lin
Keyword(s):  
High Performance ◽  
Large Scale ◽  
Computing System ◽  
Biomedical Data ◽  
Data Intensive Computing ◽  
Biomedical Analysis ◽  
Data Intensive ◽  
Large Scale Data ◽  
Performance Computing ◽  
Scale Data

Recent progress in high-throughput instrumentations has led to an astonishing growth in both volume and complexity of biomedical data collected from various sources. The planet-size data brings serious challenges to the storage and computing technologies. Cloud computing is an alternative to crack the nut because it gives concurrent consideration to enable storage and high-performance computing on large-scale data. This work briefly introduces the data intensive computing system and summarizes existing cloud-based resources in bioinformatics. These developments and applications would facilitate biomedical research to make the vast amount of diversification data meaningful and usable.

Overview of Big Data-Intensive Storage and its Technologies for Cloud and Fog Computing

2021 ◽  
pp. 112-153
Author(s):  
Richard S. Segall ◽  
Jeffrey S Cook ◽  
Gao Niu
Keyword(s):  
Big Data ◽  
Data Storage ◽  
High Performance ◽  
Storage Systems ◽  
Fog Computing ◽  
Storage Management ◽  
Data Intensive Computing ◽  
Computing Systems ◽  
Application Performance ◽  
Data Intensive

Computing systems are becoming increasingly data-intensive because of the explosion of data and the needs for processing the data, and subsequently storage management is critical to application performance in such data-intensive computing systems. However, if existing resource management frameworks in these systems lack the support for storage management, this would cause unpredictable performance degradation when applications are under input/output (I/O) contention. Storage management of data-intensive systems is a challenge. Big Data plays a most major role in storage systems for data-intensive computing. This article deals with these difficulties along with discussion of High Performance Computing (HPC) systems, background for storage systems for data-intensive applications, storage patterns and storage mechanisms for Big Data, the Top 10 Cloud Storage Systems for data-intensive computing in today's world, and the interface between Big Data Intensive Storage and Cloud/Fog Computing. Big Data storage and its server statistics and usage distributions for the Top 500 Supercomputers in the world are also presented graphically and discussed as data-intensive storage components that can be interfaced with Fog-to-cloud interactions and enabling protocols.

Data Intensive Computing for Bioinformatics

2013 ◽  
pp. 287-321
Author(s):  
Judy Qiu ◽  
Jaliya Ekanayake ◽  
Thilina Gunarathne ◽  
Jong Youl Choi ◽  
Seung-Hee Bae ◽  
...  
Keyword(s):  
High Performance ◽  
Large Scale ◽  
Programming Model ◽  
Life Sciences ◽  
Programming Models ◽  
Data Sets ◽  
Data Intensive Computing ◽  
Data Intensive ◽  
Data Mining Algorithms ◽  
Model Combining

Data intensive computing, cloud computing, and multicore computing are converging as frontiers to address massive data problems with hybrid programming models and/or runtimes including MapReduce, MPI, and parallel threading on multicore platforms. A major challenge is to utilize these technologies and large-scale computing resources effectively to advance fundamental science discoveries such as those in Life Sciences. The recently developed next-generation sequencers have enabled large-scale genome sequencing in areas such as environmental sample sequencing leading to metagenomic studies of collections of genes. Metagenomic research is just one of the areas that present a significant computational challenge because of the amount and complexity of data to be processed. This chapter discusses the use of innovative data-mining algorithms and new programming models for several Life Sciences applications. The authors particularly focus on methods that are applicable to large data sets coming from high throughput devices of steadily increasing power. They show results for both clustering and dimension reduction algorithms, and the use of MapReduce on modest size problems. They identify two key areas where further research is essential, and propose to develop new O(NlogN) complexity algorithms suitable for the analysis of millions of sequences. They suggest Iterative MapReduce as a promising programming model combining the best features of MapReduce with those of high performance environments such as MPI.

Overview of Big Data-Intensive Storage and its Technologies for Cloud and Fog Computing

2019 ◽  
Vol 2 (1) ◽  
pp. 74-113 ◽  
Author(s):  
Richard S. Segall ◽  
Jeffrey S Cook ◽  
Gao Niu
Keyword(s):  
Big Data ◽  
Data Storage ◽  
High Performance ◽  
Storage Systems ◽  
Fog Computing ◽  
Storage Management ◽  
Data Intensive Computing ◽  
Computing Systems ◽  
Application Performance ◽  
Data Intensive

Computing systems are becoming increasingly data-intensive because of the explosion of data and the needs for processing the data, and subsequently storage management is critical to application performance in such data-intensive computing systems. However, if existing resource management frameworks in these systems lack the support for storage management, this would cause unpredictable performance degradation when applications are under input/output (I/O) contention. Storage management of data-intensive systems is a challenge. Big Data plays a most major role in storage systems for data-intensive computing. This article deals with these difficulties along with discussion of High Performance Computing (HPC) systems, background for storage systems for data-intensive applications, storage patterns and storage mechanisms for Big Data, the Top 10 Cloud Storage Systems for data-intensive computing in today's world, and the interface between Big Data Intensive Storage and Cloud/Fog Computing. Big Data storage and its server statistics and usage distributions for the Top 500 Supercomputers in the world are also presented graphically and discussed as data-intensive storage components that can be interfaced with Fog-to-cloud interactions and enabling protocols.

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