A Unified Framework Integrating Recurrent Fully-Convolutional Networks and Optical Flow for Segmentation of the Left Ventricle in Echocardiography Data

2018 ◽  
pp. 29-37 ◽  
Author(s):  
Mohammad H. Jafari ◽  
Hany Girgis ◽  
Zhibin Liao ◽  
Delaram Behnami ◽  
Amir Abdi ◽  
...  
Keyword(s):  
Left Ventricle ◽  
Optical Flow ◽  
Unified Framework ◽  
Convolutional Networks ◽  
Fully Convolutional Networks

scholarly journals A Combined Fully Convolutional Networks and Deformable Model for Automatic Left Ventricle Segmentation Based on 3D Echocardiography

2018 ◽  
Vol 2018 ◽  
pp. 1-16 ◽  
Author(s):  
Suyu Dong ◽  
Gongning Luo ◽  
Kuanquan Wang ◽  
Shaodong Cao ◽  
Qince Li ◽  
...  
Keyword(s):  
Left Ventricle ◽  
Feature Fusion ◽  
Three Dimensional ◽  
Geometrical Model ◽  
Deformable Model ◽  
Lv Function ◽  
Practical Applications ◽  
Convolutional Networks ◽  
Fully Convolutional Networks ◽  
Three Dimensional Echocardiography

Segmentation of the left ventricle (LV) from three-dimensional echocardiography (3DE) plays a key role in the clinical diagnosis of the LV function. In this work, we proposed a new automatic method for the segmentation of LV, based on the fully convolutional networks (FCN) and deformable model. This method implemented a coarse-to-fine framework. Firstly, a new deep fusion network based on feature fusion and transfer learning, combining the residual modules, was proposed to achieve coarse segmentation of LV on 3DE. Secondly, we proposed a method of geometrical model initialization for a deformable model based on the results of coarse segmentation. Thirdly, the deformable model was implemented to further optimize the segmentation results with a regularization item to avoid the leakage between left atria and left ventricle to achieve the goal of fine segmentation of LV. Numerical experiments have demonstrated that the proposed method outperforms the state-of-the-art methods on the challenging CETUS benchmark in the segmentation accuracy and has a potential for practical applications.

scholarly journals Deep RetinaNet for Dynamic Left Ventricle Detection in Multiview Echocardiography Classification

2020 ◽  
Vol 2020 ◽  
pp. 1-6 ◽  
Author(s):  
Meijun Yang ◽  
Xiaoyan Xiao ◽  
Zhi Liu ◽  
Longkun Sun ◽  
Wei Guo ◽  
...  
Keyword(s):  
Left Ventricle ◽  
Three Dimensional ◽  
Detection Algorithm ◽  
Convolutional Networks ◽  
Fully Convolutional Networks ◽  
Dimensional Reconstruction ◽  
Feature Pyramid ◽  
The Mean ◽  
Accuracy Rates

Background. Currently, echocardiography has become an essential technology for the diagnosis of cardiovascular diseases. Accurate classification of apical two-chamber (A2C), apical three-chamber (A3C), and apical four-chamber (A4C) views and the precise detection of the left ventricle can significantly reduce the workload of clinicians and improve the reproducibility of left ventricle segmentation. In addition, left ventricle detection is significant for the three-dimensional reconstruction of the heart chambers. Method. RetinaNet is a one-stage object detection algorithm that can achieve high accuracy and efficiency at the same time. RetinaNet is mainly composed of the residual network (ResNet), the feature pyramid network (FPN), and two fully convolutional networks (FCNs); one FCN is for the classification task, and the other is for the border regression task. Results. In this paper, we use the classification subnetwork to classify A2C, A3C, and A4C images and use the regression subnetworks to detect the left ventricle simultaneously. We display not only the position of the left ventricle on the test image but also the view category on the image, which will facilitate the diagnosis. We used the mean intersection-over-union (mIOU) as an index to measure the performance of left ventricle detection and the accuracy as an index to measure the effect of the classification of the three different views. Our study shows that both classification and detection effects are noteworthy. The classification accuracy rates of A2C, A3C, and A4C are 1.000, 0.935, and 0.989, respectively. The mIOU values of A2C, A3C, and A4C are 0.858, 0.794, and 0.838, respectively.

scholarly journals Automatic Deep Learning Semantic Segmentation of Ultrasound Thyroid Cineclips using Recurrent Fully Convolutional Networks

IEEE Access ◽  
2020 ◽  
pp. 1-1
Author(s):  
Jeremy M. Webb ◽  
Duane D. Meixner ◽  
Shaheeda A. Adusei ◽  
Eric C. Polley ◽  
Mostafa Fatemi ◽  
...  
Keyword(s):  
Deep Learning ◽  
Semantic Segmentation ◽  
Convolutional Networks ◽  
Fully Convolutional Networks

scholarly journals Boundary Loss-Based 2.5D Fully Convolutional Neural Networks Approach for Segmentation: A Case Study of the Liver and Tumor on Computed Tomography

Algorithms ◽  
2021 ◽  
Vol 14 (5) ◽  
pp. 144
Author(s):  
Yuexing Han ◽  
Xiaolong Li ◽  
Bing Wang ◽  
Lu Wang
Keyword(s):  
Image Segmentation ◽  
Spatial Information ◽  
Medical Images ◽  
Tumor Segmentation ◽  
Convolutional Networks ◽  
Learning Framework ◽  
Fully Convolutional Networks ◽  
Segmentation Accuracy ◽  
Boundary Information

Image segmentation plays an important role in the field of image processing, helping to understand images and recognize objects. However, most existing methods are often unable to effectively explore the spatial information in 3D image segmentation, and they neglect the information from the contours and boundaries of the observed objects. In addition, shape boundaries can help to locate the positions of the observed objects, but most of the existing loss functions neglect the information from the boundaries. To overcome these shortcomings, this paper presents a new cascaded 2.5D fully convolutional networks (FCNs) learning framework to segment 3D medical images. A new boundary loss that incorporates distance, area, and boundary information is also proposed for the cascaded FCNs to learning more boundary and contour features from the 3D medical images. Moreover, an effective post-processing method is developed to further improve the segmentation accuracy. We verified the proposed method on LITS and 3DIRCADb datasets that include the liver and tumors. The experimental results show that the performance of the proposed method is better than existing methods with a Dice Per Case score of 74.5% for tumor segmentation, indicating the effectiveness of the proposed method.

scholarly journals Domain Adaptation for Semantic Segmentation of Historical Panchromatic Orthomosaics in Central Africa

2021 ◽  
Vol 10 (8) ◽  
pp. 523
Author(s):  
Nicholus Mboga ◽  
Stefano D’Aronco ◽  
Tais Grippa ◽  
Charlotte Pelletier ◽  
Stefanos Georganos ◽  
...  
Keyword(s):  
Land Cover ◽  
Domain Adaptation ◽  
Central Africa ◽  
Semantic Segmentation ◽  
Target Domain ◽  
Convolutional Networks ◽  
Fully Convolutional Networks ◽  
The Cost ◽  
Performance Gains

Multitemporal environmental and urban studies are essential to guide policy making to ultimately improve human wellbeing in the Global South. Land-cover products derived from historical aerial orthomosaics acquired decades ago can provide important evidence to inform long-term studies. To reduce the manual labelling effort by human experts and to scale to large, meaningful regions, we investigate in this study how domain adaptation techniques and deep learning can help to efficiently map land cover in Central Africa. We propose and evaluate a methodology that is based on unsupervised adaptation to reduce the cost of generating reference data for several cities and across different dates. We present the first application of domain adaptation based on fully convolutional networks for semantic segmentation of a dataset of historical panchromatic orthomosaics for land-cover generation for two focus cities Goma-Gisenyi and Bukavu. Our experimental evaluation shows that the domain adaptation methods can reach an overall accuracy between 60% and 70% for different regions. If we add a small amount of labelled data from the target domain, too, further performance gains can be achieved.

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