Cross-Platform Pathway Activity Transformation and Classification of Microarray Data

Author(s):  
Worrawat Engchuan ◽  
Asawin Meechai ◽  
Sissades Tongsima ◽  
Jonathan H. Chan
Author(s):  
Worrawat Engchuan ◽  
Asawin Meechai ◽  
Sissades Tongsima ◽  
Jonathan H. Chan

2018 ◽  
Vol 32 (7) ◽  
pp. 2397-2404
Author(s):  
Mausami Mondal ◽  
Rahul Semwal ◽  
Utkarsh Raj ◽  
Imlimaong Aier ◽  
Pritish Kumar Varadwaj
Keyword(s):  

2009 ◽  
Vol 2009 ◽  
pp. 1-10 ◽  
Author(s):  
Nicoletta Dessì ◽  
Barbara Pes

The classification of cancers from gene expression profiles is a challenging research area in bioinformatics since the high dimensionality of microarray data results in irrelevant and redundant information that affects the performance of classification. This paper proposes using an evolutionary algorithm to select relevant gene subsets in order to further use them for the classification task. This is achieved by combining valuable results from different feature ranking methods into feature pools whose dimensionality is reduced by a wrapper approach involving a genetic algorithm and SVM classifier. Specifically, the GA explores the space defined by each feature pool looking for solutions that balance the size of the feature subsets and their classification accuracy. Experiments demonstrate that the proposed method provide good results in comparison to different state of art methods for the classification of microarray data.


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